Non-Coding RNA Search

Ss1.1-rjca31c_o4.5

Sequence:


               
               AAGCCGAACCTGGCTGATTTGGCGGTGTACGGCGTGCTGCGGGTGATGGAGGGCCTGGAG
GCCTTCGAGGACCTGATGCGTCACACTCACATCCAGCCCTGGTACCTGCGGGTGGAGAAA
GCCATCGCCGAGGCCGTCCAGTGAGCTGAGCATCCCCACCAGGAGGAGGCGGAAGACAGT
GGAGGATGCCGGCCGTGGGGCACAGGGCGATGCTGTGAGGCTGGGCAGTGGGGGATGGGG
TCATCTGGCCTCTTGTGCACCCCCCCCACCCCCAGACCTCTCACTTCCAACAAAGAACAT
TTGCTGGGGCCCTGGGATGCTGGGGGACGAAGCCCAAGCTTGGTTTCCGTTCACAGCCAC
CTCCCCGCGCACACAGGCACAGAAGGCTACCTCCCCCACCCCCTCCTGGGTCTCCCTGCT
GTCAGCCTGCTCTGGGGCTCTCAGGGCTGTGCTGTCTGTGCCCCGTGGATGGGAACTGGG
TTGGGCTCCCGCCCAGGCAAGGGAAATGGGGTTTGTCTGGTTTGGGGAGGCCCCAAGCCT
GGCTCCCTTGTTCCTGCTCCTTCCAGGTGCCCCCTGGACTGTGTGTCATGTTTGCAATAA
AGAGATTGGCCGCTCCCCACGTGGCGGCCCCTCTGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCGAACCTGGCTGATTTGGCGGTGTACGGCGTGCTGCGGGTGATGGAGGGCCTGGAG
GCCTTCGAGGACCTGATGCGTCACACTCACATCCAGCCCTGGTACCTGCGGGTGGAGAAA
GCCATCGCCGAGGCCGTCCAGTGAGCTGAGCATCCCCACCAGGAGGAGGCGGAAGACAGT
GGAGGATGCCGGCCGTGGGGCACAGGGCGATGCTGTGAGGCTGGGCAGTGGGGGATGGGG
TCATCTGGCCTCTTGTGCACCCCCCCCACCCCCAGACCTCTCACTTCCAACAAAGAACAT
TTGCTGGGGCCCTGGGATGCTGGGGGACGAAGCCCAAGCTTGGTTTCCGTTCACAGCCAC
CTCCCCGCGCACACAGGCACAGAAGGCTACCTCCCCCACCCCCTCCTGGGTCTCCCTGCT
GTCAGCCTGCTCTGGGGCTCTCAGGGCTGTGCTGTCTGTGCCCCGTGGATGGGAACTGGG
TTGGGCTCCCGCCCAGGCAAGGGAAATGGGGTTTGTCTGGTTTGGGGAGGCCCCAAGCCT
GGCTCCCTTGTTCCTGCTCCTTCCAGGTGCCCCCTGGACTGTGTGTCATGTTTGCAATAA
AGAGATTGGCCGCTCCCCACGTGGCGGCCCCTCTGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               100-207, - strand, RNAz p=0.749023

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-207, - strand, RNAz p=0.749023

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-628, gnl|bosTau2|chr11 (77615332-77614680)
               

               
               21-628, gnl|Hg17|chr9 (127963107-127962537)
               

               
               21-628, gnl|Mm7|chr2 (32409486-32410062)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-628, gnl|bosTau2|chr11 (77615332-77614680)
               

               
               21-628, gnl|Hg17|chr9 (127963107-127962537)
               

               
               21-628, gnl|Mm7|chr2 (32409486-32410062)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               jca (0.11396)

	21-628, gnl\|bosTau2\|chr11 (77615332-77614680)
	21-628, gnl\|Hg17\|chr9 (127963107-127962537)
	21-628, gnl\|Mm7\|chr2 (32409486-32410062)