Non-Coding RNA Search

Ss1.1-rjca32c_d2.5

Sequence:


               
               CAGAACCTGAACTCGCTGCGTGGCTTCGTGCTGGGCCCGCTGGTGCTCTACCTGCTGGTG
GGCACGCTCTTCCTCCTGGCAGGCTTCGTGTCGCTCTTCCGCATCCGCAGCGTCATCAAG
CAGGGCGGCACCAAGACGGACAAGCTGGAAAAGCTCATGATCCGCATCGGCATCTTCACG
CTGCTCTACACGGTGCCTGCCAGCATCGTGGTGGCCTGCTACCTGTACGAACAGCACTAT
CGCGAGAGTTGGGAGGCTGCGCTCACCTGCGCGTGCCCAGGCCCCGACGCCGGGCAGCCA
CGTGCCAAGCCTGAGTACTGGGTGCTCATGCTCAAATACTTCATGTGCCTGGTGGTGGGC
ATCACGTCAGGCGTCTGGATTTGGTCTGGCAAGACTGTGGAGTCGTGGCGGCGCTTCACC
AGCCGCTGCTGCTGCCGCCCGCGGCGGGGCCACAAGAGCGGCGGGGCCACGGCCACCGGG
GACTACGCCGAGGCCAGCGCAGCGCTCACAGGCAGGACCGGGCCACCCGGCCCTGCCGCC
GCCACCTATCACAAGCAGGTGTCCCTGTCTCACGTGTAGGAGGAGGCTGAGGGACCGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAACCTGAACTCGCTGCGTGGCTTCGTGCTGGGCCCGCTGGTGCTCTACCTGCTGGTG
GGCACGCTCTTCCTCCTGGCAGGCTTCGTGTCGCTCTTCCGCATCCGCAGCGTCATCAAG
CAGGGCGGCACCAAGACGGACAAGCTGGAAAAGCTCATGATCCGCATCGGCATCTTCACG
CTGCTCTACACGGTGCCTGCCAGCATCGTGGTGGCCTGCTACCTGTACGAACAGCACTAT
CGCGAGAGTTGGGAGGCTGCGCTCACCTGCGCGTGCCCAGGCCCCGACGCCGGGCAGCCA
CGTGCCAAGCCTGAGTACTGGGTGCTCATGCTCAAATACTTCATGTGCCTGGTGGTGGGC
ATCACGTCAGGCGTCTGGATTTGGTCTGGCAAGACTGTGGAGTCGTGGCGGCGCTTCACC
AGCCGCTGCTGCTGCCGCCCGCGGCGGGGCCACAAGAGCGGCGGGGCCACGGCCACCGGG
GACTACGCCGAGGCCAGCGCAGCGCTCACAGGCAGGACCGGGCCACCCGGCCCTGCCGCC
GCCACCTATCACAAGCAGGTGTCCCTGTCTCACGTGTAGGAGGAGGCTGAGGGACCGGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-390, + strand, RNAz p=0.907194

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-390, + strand, RNAz p=0.907194

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-473, gnl|bosTau2|chr13 (15026609-15026131)
               

               
               1-473, gnl|Hg17|chr10 (35968938-35968464)
               

               
               1-473, gnl|Mm7|chr18 (9418093-9418568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-473, gnl|bosTau2|chr13 (15026609-15026131)
               

               
               1-473, gnl|Hg17|chr10 (35968938-35968464)
               

               
               1-473, gnl|Mm7|chr18 (9418093-9418568)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.22792)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)

	1-473, gnl\|bosTau2\|chr13 (15026609-15026131)
	1-473, gnl\|Hg17\|chr10 (35968938-35968464)
	1-473, gnl\|Mm7\|chr18 (9418093-9418568)