Non-Coding RNA Search

Ss1.1-rjca32c_i14.5

Sequence:


               
               CGACACCCTCCAGCTCCCGCCCCACCCCTCACCAGCACCGTCTCTCTGCCCAGGCAAGCC
AGGGTGGGAGAGGGACTCGGAGGGCCCTGGCACCCGCCTCCAAGTCTGCCTTGAGGGCCT
CAGCTTCCTGGGAGCCCACGGCTGCAGCTCTGAGATCCAGACAGCAGGTGACAGGGCTGT
CGATTGGCCTTGGTCCCTTTGTGCTTCTGGATCCCTCCTCTCCTGCTGCCCTGGGCCCTC
CACTGAGAGACCCTGCCCTACTTGGCCGTTGCACCAGGGCCCTTCCTGCCCTTGAAAGTG
AAGGCCCACTGGTCCCTGCCTCCCCTGCCCTGTTGCTGTCAGCAAAGGCAAGGGCATTGG
AGAACTTTCCCTGTCGGGGTCCTTTTGCTAGTCACAGACTCTATATTTGATACTAAAAAA
ATATCTATTTAAAAACGTGGAAGGAAAAAACAACACAGAAAAAAGGCATTCCTCCCTCAC
TCCCCTCCTTAAACATATAGTATTTTGAAAGTCAAGAAAGCAAATCCAACCCATCGCAGA
AGCTCTTTGAGGGCTCTTGGGGCACAGGAGTGGGAGGGCTCCTAGCCCCCCTCTGGGTGT
CTCCCCAGCTACCTGCACAGGAACCTTCTTTTCTCTGAGAAAGCCGAGAGGGAACATTGG
CTCACACACTGTGAGATTTTTGTTTTTATACTTGGAAGTGGTGAATTATTTTATATGAAG
TCATTTAAATATCTATTTAAAAAAATAGGAAGCTGCTTATATATTTAATAATAAAAGAAG
TGCACAAGCTGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACACCCTCCAGCTCCCGCCCCACCCCTCACCAGCACCGTCTCTCTGCCCAGGCAAGCC
AGGGTGGGAGAGGGACTCGGAGGGCCCTGGCACCCGCCTCCAAGTCTGCCTTGAGGGCCT
CAGCTTCCTGGGAGCCCACGGCTGCAGCTCTGAGATCCAGACAGCAGGTGACAGGGCTGT
CGATTGGCCTTGGTCCCTTTGTGCTTCTGGATCCCTCCTCTCCTGCTGCCCTGGGCCCTC
CACTGAGAGACCCTGCCCTACTTGGCCGTTGCACCAGGGCCCTTCCTGCCCTTGAAAGTG
AAGGCCCACTGGTCCCTGCCTCCCCTGCCCTGTTGCTGTCAGCAAAGGCAAGGGCATTGG
AGAACTTTCCCTGTCGGGGTCCTTTTGCTAGTCACAGACTCTATATTTGATACTAAAAAA
ATATCTATTTAAAAACGTGGAAGGAAAAAACAACACAGAAAAAAGGCATTCCTCCCTCAC
TCCCCTCCTTAAACATATAGTATTTTGAAAGTCAAGAAAGCAAATCCAACCCATCGCAGA
AGCTCTTTGAGGGCTCTTGGGGCACAGGAGTGGGAGGGCTCCTAGCCCCCCTCTGGGTGT
CTCCCCAGCTACCTGCACAGGAACCTTCTTTTCTCTGAGAAAGCCGAGAGGGAACATTGG
CTCACACACTGTGAGATTTTTGTTTTTATACTTGGAAGTGGTGAATTATTTTATATGAAG
TCATTTAAATATCTATTTAAAAAAATAGGAAGCTGCTTATATATTTAATAATAAAAGAAG
TGCACAAGCTGCAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               528-642, - strand, RNAz p=0.679459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               528-642, - strand, RNAz p=0.679459

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-792, gnl|bosTau2|chr3 (25505582-25504787)
               

               
               2-792, gnl|Hg17|chr1 (110184883-110185656)
               

               
               2-792, gnl|Mm7|chr3 (107560097-107559345)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-792, gnl|bosTau2|chr3 (25505582-25504787)
               

               
               2-792, gnl|Hg17|chr1 (110184883-110185656)
               

               
               2-792, gnl|Mm7|chr3 (107560097-107559345)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cga (0.279096)
               

               
               jca (0.22792)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               jca (0.22792)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	2-792, gnl\|bosTau2\|chr3 (25505582-25504787)
	2-792, gnl\|Hg17\|chr1 (110184883-110185656)
	2-792, gnl\|Mm7\|chr3 (107560097-107559345)

	cga (0.279096)
	jca (0.22792)
	aor (0.195274)
	sto (0.179824)
	cut (0.169924)
	csp (0.161186)
	cag (0.151194)
	lnt (0.142308)
	che (0.136314)
	eep (0.122564)
	cty (0.10408)
	jej (0.0989218)