Non-Coding RNA Search

Ss1.1-rjca33c_g17.5

Sequence:


               
               ATGCCCACAATCTGCACTCCCTCACCTCCATCGTGGACAGCATCACAGTGGAGGATGTGG
CTGTGGCCTTCCCAGATGAAACCATGCCCAACTGAGACTGTCTGCCAGGATGGGTGTGCG
TGAGAGCCCCCCCCAAGGCTGGCCGGAGACGGCACCACTTCTGCAGCAGGGCTCTCCTAA
GCCAGTTGTCCTGCTGCCAGGAAGCCAGCCCTGGGGTTGCCAAATGCCAGACTAACCCCC
TCCTCATCCATATAAGGTTAGCCCACCACCCAGAGAGGGAATGGATGCTCTCATTTATCT
GACTCCTTAGAGCAGAAAGCAGTTCTGTTTCCAAGGGGATAAAACAGGGGACCAGAGTGC
CCCCTTGCGTAAGCCCCCTGGCTCAGGGGACAAACTCAGGAGCTTCCCTTTGATCATAAT
GCAGCCTTCAATTCCACCCCCTAAAAAGAAACAGTTTGAGAGACGAAGAGTGTCTTGACC
TGGACAAGCTATGCACATCTCCTGTTCGTGTCTCTTCCTAAGCCAGTGGCTAGGCTGGGC
CTGCCCTGAATTGAGAGAAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCCCACAATCTGCACTCCCTCACCTCCATCGTGGACAGCATCACAGTGGAGGATGTGG
CTGTGGCCTTCCCAGATGAAACCATGCCCAACTGAGACTGTCTGCCAGGATGGGTGTGCG
TGAGAGCCCCCCCCAAGGCTGGCCGGAGACGGCACCACTTCTGCAGCAGGGCTCTCCTAA
GCCAGTTGTCCTGCTGCCAGGAAGCCAGCCCTGGGGTTGCCAAATGCCAGACTAACCCCC
TCCTCATCCATATAAGGTTAGCCCACCACCCAGAGAGGGAATGGATGCTCTCATTTATCT
GACTCCTTAGAGCAGAAAGCAGTTCTGTTTCCAAGGGGATAAAACAGGGGACCAGAGTGC
CCCCTTGCGTAAGCCCCCTGGCTCAGGGGACAAACTCAGGAGCTTCCCTTTGATCATAAT
GCAGCCTTCAATTCCACCCCCTAAAAAGAAACAGTTTGAGAGACGAAGAGTGTCTTGACC
TGGACAAGCTATGCACATCTCCTGTTCGTGTCTCTTCCTAAGCCAGTGGCTAGGCTGGGC
CTGCCCTGAATTGAGAGAAGAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               43-156, - strand, RNAz p=0.507866
               

               
               122-240, - strand, RNAz p=0.829004
               

               
               276-394, - strand, RNAz p=0.983297
               

               
               281-399, - strand, RNAz p=0.992851

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-156, - strand, RNAz p=0.507866
               

               
               122-240, - strand, RNAz p=0.829004
               

               
               276-394, - strand, RNAz p=0.983297
               

               
               281-399, - strand, RNAz p=0.992851

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002479, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002479, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-556, gnl|bosTau2|chr16 (125003-124456)
               

               
               3-556, gnl|canFam2|chr7 (3114408-3113986)
               

               
               3-556, gnl|echTel1|scaffold_311770 (49298-48901)
               

               
               3-556, gnl|hg17|chr1 (199784155-199784582)
               

               
               3-556, gnl|Hg17|chr1 (199784787-199784242)
               

               
               3-556, gnl|loxAfr1|scaffold_9996 (62784-62348)
               

               
               3-556, gnl|mm7|chr1 (134182104-134181694)
               

               
               3-556, gnl|Mm7|chr1 (134181488-134182025)
               

               
               3-556, gnl|monDom2|scaffold_13 (3074596-3074982)
               

               
               3-556, gnl|oryCun1|scaffold_88731 (1709-1317)
               

               
               3-556, gnl|panTro1|chr1 (182638293-182638720)
               

               
               3-556, gnl|rheMac2|chr1 (167355752-167355321)
               

               
               3-556, gnl|rn3|chr13 (47260124-47259718)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-556, gnl|bosTau2|chr16 (125003-124456)
               

               
               3-556, gnl|canFam2|chr7 (3114408-3113986)
               

               
               3-556, gnl|echTel1|scaffold_311770 (49298-48901)
               

               
               3-556, gnl|hg17|chr1 (199784155-199784582)
               

               
               3-556, gnl|Hg17|chr1 (199784787-199784242)
               

               
               3-556, gnl|loxAfr1|scaffold_9996 (62784-62348)
               

               
               3-556, gnl|mm7|chr1 (134182104-134181694)
               

               
               3-556, gnl|Mm7|chr1 (134181488-134182025)
               

               
               3-556, gnl|monDom2|scaffold_13 (3074596-3074982)
               

               
               3-556, gnl|oryCun1|scaffold_88731 (1709-1317)
               

               
               3-556, gnl|panTro1|chr1 (182638293-182638720)
               

               
               3-556, gnl|rheMac2|chr1 (167355752-167355321)
               

               
               3-556, gnl|rn3|chr13 (47260124-47259718)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               ctl (0.153069)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ctl (0.153069)
               

               
               jca (0.11396)

	43-156, - strand, RNAz p=0.507866
	122-240, - strand, RNAz p=0.829004
	276-394, - strand, RNAz p=0.983297
	281-399, - strand, RNAz p=0.992851

	3-556, gnl\|bosTau2\|chr16 (125003-124456)
	3-556, gnl\|canFam2\|chr7 (3114408-3113986)
	3-556, gnl\|echTel1\|scaffold_311770 (49298-48901)
	3-556, gnl\|hg17\|chr1 (199784155-199784582)
	3-556, gnl\|Hg17\|chr1 (199784787-199784242)
	3-556, gnl\|loxAfr1\|scaffold_9996 (62784-62348)
	3-556, gnl\|mm7\|chr1 (134182104-134181694)
	3-556, gnl\|Mm7\|chr1 (134181488-134182025)
	3-556, gnl\|monDom2\|scaffold_13 (3074596-3074982)
	3-556, gnl\|oryCun1\|scaffold_88731 (1709-1317)
	3-556, gnl\|panTro1\|chr1 (182638293-182638720)
	3-556, gnl\|rheMac2\|chr1 (167355752-167355321)
	3-556, gnl\|rn3\|chr13 (47260124-47259718)