Non-Coding RNA Search

Ss1.1-rjca33c_g5.5

Sequence:


               
               TTGACTATCGGGCTGCTTGCTTTTGTCATCGAAATCTCATTGAAATTGGCTACGTCTGTT
CTGTGTGCTTGTCAATATTCTGCAATTTCAGCCCTATCTGCACTACATGCGAGACAGCCT
TTAAGATTTCTCTACCGCCCGTACTGAAGGCCAAGAAAAAGAAACTGAAAATGTCCTCAT
GATAGTAAAAATTTTTTCTCCATCATGTAGAGCTGTTAGTAGATATTGTGTGGCAGAATC
TTTGTTAGGAAGATTCTGGGAAAAAAAAAAAAAGTTGTGTGTAAGGTAATTTTAATGAAC
TTTACTATAGGACATATTTATAAAACATCATCCTTATCCTGTGCTTCTAGGGGCCTGATT
TGAGGGAGTCATTCTATGCAATATATCCTAAAATCTCTTCTGACTGGTTTTGGTCCAGAA
AGAGGGAAAAAAGCACAAATTGGTAATTTTTTTTTTTCCTTCAGTGAGATGACTGTCAAA
GCCAGTCTGTCCTTACTGATTGTAGGTGTCAAAACCTATTACCCAAGTCTAGGTTCTTCC
TGTGAAATGTATGATGTGAAATTTGAGCACAGTTTTGGAAAAAGTGACTATTTATGGAGG
AGTGGTGTTAATCAAGATAGAACAGGTTACTTGAGTTAACAGTTAACTTCCACAATAGTC
ATCTAAATAAAACCCTTATCATCTAGATTGAGACTTAGCTGCAGATACTAGCAGATATTT
ATTCTTTTGTCTGACGGTATATGTTTGGACAAATTTATCCGAATGTTAGTTTGTCAGTGA
ATAACTCTAAAATCTGATTTAATATGAGTAAGGAGAGTGAGCACAGCGGTCTGATAGCAA
CTTTCTTTAAAAGCAATTGTGGGAAGAGCTTATTTGTGAAAGCCAATGTCTGGGTTCTGA
GGGGGAATTTCTTGGGGAGAATGGCTTCTTTGCAGTTACATGTTACCCCCCACATAGAAT
TCATCCTTTTTTTTTGATGGGGGTGAGGGGAAGCATTGATATTAGAGAACTGTTCTCTAG
AAGCTTTGGATTTAATACTGAAAAACTTAAGTTCAAAAGAAAAATTATTTGTAATTTCAG
TGATAAAAAAACATATTTTTTCGAGTTCCTGTCATGGCTCAGTGGTTAACGAATCTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACTATCGGGCTGCTTGCTTTTGTCATCGAAATCTCATTGAAATTGGCTACGTCTGTT
CTGTGTGCTTGTCAATATTCTGCAATTTCAGCCCTATCTGCACTACATGCGAGACAGCCT
TTAAGATTTCTCTACCGCCCGTACTGAAGGCCAAGAAAAAGAAACTGAAAATGTCCTCAT
GATAGTAAAAATTTTTTCTCCATCATGTAGAGCTGTTAGTAGATATTGTGTGGCAGAATC
TTTGTTAGGAAGATTCTGGGAAAAAAAAAAAAAGTTGTGTGTAAGGTAATTTTAATGAAC
TTTACTATAGGACATATTTATAAAACATCATCCTTATCCTGTGCTTCTAGGGGCCTGATT
TGAGGGAGTCATTCTATGCAATATATCCTAAAATCTCTTCTGACTGGTTTTGGTCCAGAA
AGAGGGAAAAAAGCACAAATTGGTAATTTTTTTTTTTCCTTCAGTGAGATGACTGTCAAA
GCCAGTCTGTCCTTACTGATTGTAGGTGTCAAAACCTATTACCCAAGTCTAGGTTCTTCC
TGTGAAATGTATGATGTGAAATTTGAGCACAGTTTTGGAAAAAGTGACTATTTATGGAGG
AGTGGTGTTAATCAAGATAGAACAGGTTACTTGAGTTAACAGTTAACTTCCACAATAGTC
ATCTAAATAAAACCCTTATCATCTAGATTGAGACTTAGCTGCAGATACTAGCAGATATTT
ATTCTTTTGTCTGACGGTATATGTTTGGACAAATTTATCCGAATGTTAGTTTGTCAGTGA
ATAACTCTAAAATCTGATTTAATATGAGTAAGGAGAGTGAGCACAGCGGTCTGATAGCAA
CTTTCTTTAAAAGCAATTGTGGGAAGAGCTTATTTGTGAAAGCCAATGTCTGGGTTCTGA
GGGGGAATTTCTTGGGGAGAATGGCTTCTTTGCAGTTACATGTTACCCCCCACATAGAAT
TCATCCTTTTTTTTTGATGGGGGTGAGGGGAAGCATTGATATTAGAGAACTGTTCTCTAG
AAGCTTTGGATTTAATACTGAAAAACTTAAGTTCAAAAGAAAAATTATTTGTAATTTCAG
TGATAAAAAAACATATTTTTTCGAGTTCCTGTCATGGCTCAGTGGTTAACGAATCTGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864645|ref|XP_589322.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864645|ref|XP_589322.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               113-231, - strand, RNAz p=0.828733

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-231, - strand, RNAz p=0.828733

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               113-1100, gnl|bosTau2|chr17 (26620848-26621812)
               

               
               113-1100, gnl|Hg17|chr12 (122669593-122670674)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-1100, gnl|bosTau2|chr17 (26620848-26621812)
               

               
               113-1100, gnl|Hg17|chr12 (122669593-122670674)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	113-1100, gnl\|bosTau2\|chr17 (26620848-26621812)
	113-1100, gnl\|Hg17\|chr12 (122669593-122670674)