Non-Coding RNA Search

Ss1.1-rjca33c_j8.5

Sequence:


               
               CCGATATTAAGAAACAGCATCCTTCTTCGGTGAAATTTGGGTGCCAAACCACCTGCCCAG
AAGGTCCGGGCCTTTTCTTTTCAGAAGTTAGCATCCTCCTTTCGACCGTCCAAGTCATTA
CGAATTCTGACTTGTGTTAGGAACACGGTGGACAATGGAAACTTTTCTCTGGATTGTTTG
AGTAATATTTTTGGGATCATCCTTCCTTTCTGTACCACTTTAATTTAAAAGAACTATCAG
CCAGGTTATATTATCTCCCAGCAGGTAATATAGCTCTTTCCTTTTATTATTAGCTCTTCT
CTGGACCCGCAGCCATCTCCTGATATTTGGTAGAGTAACACCTTTACACGCGTGCTTGCG
TCGTAATTTAAAATACTGTATCCCGCATGTAGATATAATGTACATAACAGTTTAACCTCA
AGGTTGCTCGAGTCAGGGCCCCCGGTACCTGAGACAGTAATAGCAAGTGTGTTCGCTCCT
AGCCCCACACCAGGGTTGATGTGGATTTACTAGACCCCTTTCTGCAGTATTCACATGGTG
GATTTTCTTTTTGTCATGTCAGTGTGTGCGTGGAGAGTGTATGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGATATTAAGAAACAGCATCCTTCTTCGGTGAAATTTGGGTGCCAAACCACCTGCCCAG
AAGGTCCGGGCCTTTTCTTTTCAGAAGTTAGCATCCTCCTTTCGACCGTCCAAGTCATTA
CGAATTCTGACTTGTGTTAGGAACACGGTGGACAATGGAAACTTTTCTCTGGATTGTTTG
AGTAATATTTTTGGGATCATCCTTCCTTTCTGTACCACTTTAATTTAAAAGAACTATCAG
CCAGGTTATATTATCTCCCAGCAGGTAATATAGCTCTTTCCTTTTATTATTAGCTCTTCT
CTGGACCCGCAGCCATCTCCTGATATTTGGTAGAGTAACACCTTTACACGCGTGCTTGCG
TCGTAATTTAAAATACTGTATCCCGCATGTAGATATAATGTACATAACAGTTTAACCTCA
AGGTTGCTCGAGTCAGGGCCCCCGGTACCTGAGACAGTAATAGCAAGTGTGTTCGCTCCT
AGCCCCACACCAGGGTTGATGTGGATTTACTAGACCCCTTTCTGCAGTATTCACATGGTG
GATTTTCTTTTTGTCATGTCAGTGTGTGCGTGGAGAGTGTATGTGTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               195-350, - strand, RNAz p=0.938371
               

               
               269-407, - strand, RNAz p=0.992863

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               195-350, - strand, RNAz p=0.938371
               

               
               269-407, - strand, RNAz p=0.992863

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-476, gnl|bosTau2|chr20 (2070686-2071151)
               

               
               3-476, gnl|canFam2|chr4 (43556819-43556377)
               

               
               3-476, gnl|dasNov1|scaffold_3316 (76254-75818)
               

               
               3-476, gnl|echTel1|scaffold_233449 (3407-3818)
               

               
               3-476, gnl|galGal2|chr13 (6656265-6656742)
               

               
               3-476, gnl|hg17|chr5 (171222793-171223235)
               

               
               3-476, gnl|Hg17|chr5 (171223354-171222881)
               

               
               3-476, gnl|loxAfr1|scaffold_91611 (457-25)
               

               
               3-476, gnl|mm7|chr11 (32697375-32696987)
               

               
               3-476, gnl|Mm7|chr11 (32696866-32697314)
               

               
               3-476, gnl|monDom2|scaffold_6 (28979973-28979537)
               

               
               3-476, gnl|oryCun1|scaffold_196578 (105058-104609)
               

               
               3-476, gnl|panTro1|chr4 (178489352-178489780)
               

               
               3-476, gnl|rheMac2|chr6 (168237333-168237776)
               

               
               3-476, gnl|rn3|chr10 (17599716-17599318)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-476, gnl|bosTau2|chr20 (2070686-2071151)
               

               
               3-476, gnl|canFam2|chr4 (43556819-43556377)
               

               
               3-476, gnl|dasNov1|scaffold_3316 (76254-75818)
               

               
               3-476, gnl|echTel1|scaffold_233449 (3407-3818)
               

               
               3-476, gnl|galGal2|chr13 (6656265-6656742)
               

               
               3-476, gnl|hg17|chr5 (171222793-171223235)
               

               
               3-476, gnl|Hg17|chr5 (171223354-171222881)
               

               
               3-476, gnl|loxAfr1|scaffold_91611 (457-25)
               

               
               3-476, gnl|mm7|chr11 (32697375-32696987)
               

               
               3-476, gnl|Mm7|chr11 (32696866-32697314)
               

               
               3-476, gnl|monDom2|scaffold_6 (28979973-28979537)
               

               
               3-476, gnl|oryCun1|scaffold_196578 (105058-104609)
               

               
               3-476, gnl|panTro1|chr4 (178489352-178489780)
               

               
               3-476, gnl|rheMac2|chr6 (168237333-168237776)
               

               
               3-476, gnl|rn3|chr10 (17599716-17599318)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               jca (0.11396)

	195-350, - strand, RNAz p=0.938371
	269-407, - strand, RNAz p=0.992863

	3-476, gnl\|bosTau2\|chr20 (2070686-2071151)
	3-476, gnl\|canFam2\|chr4 (43556819-43556377)
	3-476, gnl\|dasNov1\|scaffold_3316 (76254-75818)
	3-476, gnl\|echTel1\|scaffold_233449 (3407-3818)
	3-476, gnl\|galGal2\|chr13 (6656265-6656742)
	3-476, gnl\|hg17\|chr5 (171222793-171223235)
	3-476, gnl\|Hg17\|chr5 (171223354-171222881)
	3-476, gnl\|loxAfr1\|scaffold_91611 (457-25)
	3-476, gnl\|mm7\|chr11 (32697375-32696987)
	3-476, gnl\|Mm7\|chr11 (32696866-32697314)
	3-476, gnl\|monDom2\|scaffold_6 (28979973-28979537)
	3-476, gnl\|oryCun1\|scaffold_196578 (105058-104609)
	3-476, gnl\|panTro1\|chr4 (178489352-178489780)
	3-476, gnl\|rheMac2\|chr6 (168237333-168237776)
	3-476, gnl\|rn3\|chr10 (17599716-17599318)