Non-Coding RNA Search

Ss1.1-rjca33c_n9.5

Sequence:


               
               GCTATCCGCACTCATCCGCTCTGCCGGGTGACCCTGTGGGAAGGGAGACACAGCGAAATC
GGAGGTCCTTGCTCCTTGCTTCGCTGAAGGGCGTTTGTTGTCAGGTTTCGGCCTTCAGGC
CTGGCGTTCGACTTAGCGCGCCAAGCTTGGTCGCCTAAGTCGGGTGCCACTTCGGCGAGG
TTTGCATCTGCTTCTTGGGTCCACATCGCCCCCCTTTGGTGGCCGGAGTCCCCAGGAGTC
CCAGGCACCATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAGGTC
CTGCACGGGAACTTTCCGGTTATCGCTGCGCCAGGCACCATGAGCAGCAAAGTCTCTCGC
GACACCCTGTACGAGGCGGTGCGGGAGGTCCTGCACGGGAACCAGCGCAAGCGCCGGAAG
TTTTTGGAGACGGTGGAGCTTCAGATCAGCCTGAAGAACTATGACCCACAGAAGGACAAA
CGCTTCTCGGGCACCGTCAGGTTGGCACCGTTCTGACCCCACCCAGCCCTCAGTGTCCCC
GTGCCCGGCTCCTCCCTTCAGGCTCCTGTTGAGCCCTTCCGGTTATCGCTGCGCCAGGCA
CCATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAGGTCCTGCACG
GGAACCAGCGCAAGCGCCGGAAGTTTTTGGAGACGGTGGAGCTTCAGATCAGCCTGAAGA
ACTATGACCCACAGAAGGACAAACGCTTCTCGGGCACCGTCAGGCTTAAGTCTACTCCCC
GCCCCAAGTTCTCCGTGTGTGTCCTGGGAGACCAGCAGCATTGTGATGAGGCCAAGGCTG
TGGATATCCCGCACATGGACATCGAGGCACTGAAGAAACTCAACAAGAATAAGAAACTGG
TCAAGAAGCTGGCCAAGAAGTATGATGCCTTTTTGGCTTCAGAATCTCTAATCAAGCAGA
TTCCACGAATCCTGGGCCCTGGCCTGAATAAGGCTGGCAAATTCCCTTCCTTGCTGACCC
ACAATGAGAACATGGTGGCCAAAGTTGATGAAGTGAAGTCCACGATCAAGTTCCAGATGA
AGAAGGTGCTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACAGATGATGAGCTTG
TGTACAACATCCACTTAGCTGTCAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGA
ACGTCCGGGCTTTGTACATTAAGAGCACCATGGGCAAGCCCCAGCGCCTATACTAAGGAT
CAACTCAATAAACTATATGCTAGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTATCCGCACTCATCCGCTCTGCCGGGTGACCCTGTGGGAAGGGAGACACAGCGAAATC
GGAGGTCCTTGCTCCTTGCTTCGCTGAAGGGCGTTTGTTGTCAGGTTTCGGCCTTCAGGC
CTGGCGTTCGACTTAGCGCGCCAAGCTTGGTCGCCTAAGTCGGGTGCCACTTCGGCGAGG
TTTGCATCTGCTTCTTGGGTCCACATCGCCCCCCTTTGGTGGCCGGAGTCCCCAGGAGTC
CCAGGCACCATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAGGTC
CTGCACGGGAACTTTCCGGTTATCGCTGCGCCAGGCACCATGAGCAGCAAAGTCTCTCGC
GACACCCTGTACGAGGCGGTGCGGGAGGTCCTGCACGGGAACCAGCGCAAGCGCCGGAAG
TTTTTGGAGACGGTGGAGCTTCAGATCAGCCTGAAGAACTATGACCCACAGAAGGACAAA
CGCTTCTCGGGCACCGTCAGGTTGGCACCGTTCTGACCCCACCCAGCCCTCAGTGTCCCC
GTGCCCGGCTCCTCCCTTCAGGCTCCTGTTGAGCCCTTCCGGTTATCGCTGCGCCAGGCA
CCATGAGCAGCAAAGTCTCTCGCGACACCCTGTACGAGGCGGTGCGGGAGGTCCTGCACG
GGAACCAGCGCAAGCGCCGGAAGTTTTTGGAGACGGTGGAGCTTCAGATCAGCCTGAAGA
ACTATGACCCACAGAAGGACAAACGCTTCTCGGGCACCGTCAGGCTTAAGTCTACTCCCC
GCCCCAAGTTCTCCGTGTGTGTCCTGGGAGACCAGCAGCATTGTGATGAGGCCAAGGCTG
TGGATATCCCGCACATGGACATCGAGGCACTGAAGAAACTCAACAAGAATAAGAAACTGG
TCAAGAAGCTGGCCAAGAAGTATGATGCCTTTTTGGCTTCAGAATCTCTAATCAAGCAGA
TTCCACGAATCCTGGGCCCTGGCCTGAATAAGGCTGGCAAATTCCCTTCCTTGCTGACCC
ACAATGAGAACATGGTGGCCAAAGTTGATGAAGTGAAGTCCACGATCAAGTTCCAGATGA
AGAAGGTGCTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACAGATGATGAGCTTG
TGTACAACATCCACTTAGCTGTCAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGA
ACGTCCGGGCTTTGTACATTAAGAGCACCATGGGCAAGCCCCAGCGCCTATACTAAGGAT
CAACTCAATAAACTATATGCTAGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5XJF6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5XJF6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1189-1311, + strand, RNAz p=0.999928

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1189-1311, + strand, RNAz p=0.999928

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               314-501, gnl|bosTau2|chr10 (25305279-25305465)
               

               
               314-501, gnl|Hg17|chr16 (84407669-84407482)
               

               
               314-501, gnl|Mm7|chr1 (65236464-65236301)
               


               
               567-857, gnl|bosTau2|chr10 (25305269-25305557)
               

               
               567-857, gnl|Hg17|chr16 (84407679-84407391)
               

               
               567-857, gnl|Mm7|chr1 (65236464-65236210)
               


               
               910-1311, gnl|bosTau2|chr11 (19108455-19108849)
               

               
               910-1311, gnl|Hg17|chr8 (18285408-18285016)
               

               
               910-1311, gnl|Mm7|chr2 (60205839-60205443)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               314-501, gnl|bosTau2|chr10 (25305279-25305465)
               

               
               314-501, gnl|Hg17|chr16 (84407669-84407482)
               

               
               314-501, gnl|Mm7|chr1 (65236464-65236301)
               


               
               567-857, gnl|bosTau2|chr10 (25305269-25305557)
               

               
               567-857, gnl|Hg17|chr16 (84407679-84407391)
               

               
               567-857, gnl|Mm7|chr1 (65236464-65236210)
               


               
               910-1311, gnl|bosTau2|chr11 (19108455-19108849)
               

               
               910-1311, gnl|Hg17|chr8 (18285408-18285016)
               

               
               910-1311, gnl|Mm7|chr2 (60205839-60205443)

Expressed library(ies): 88 entry(ies)

More info

Expressed library(ies): 88 entry(ies)

Help | Less info


               
               eje (4.34869)
               

               
               ova (3.35744)
               

               
               bla (3.35737)
               

               
               eep (3.30923)
               

               
               eru (3.12125)
               

               
               ssp (3.11695)
               

               
               nco (2.74947)
               

               
               elu (2.6975)
               

               
               hea (2.45399)
               

               
               ldo (2.32806)
               

               
               ill (2.2827)
               

               
               med (2.20879)
               

               
               thg (2.15545)
               

               
               lnt (2.13462)
               

               
               mgp (2.07612)
               

               
               fat (2.06398)
               

               
               eye (2.04604)
               

               
               che (2.04471)
               

               
               cut (2.03908)
               

               
               nep (2.02317)
               

               
               cga (1.95367)
               

               
               ton (1.755)
               

               
               sin (1.74948)
               

               
               nlu (1.72513)
               

               
               pty (1.71257)
               

               
               ste (1.6225)
               

               
               col (1.56006)
               

               
               eli (1.51814)
               

               
               cje (1.48711)
               

               
               jca (1.48148)
               

               
               csp (1.45068)
               

               
               fli (1.42017)
               

               
               csk (1.40746)
               

               
               fty (1.40672)
               

               
               ski (1.32062)
               

               
               pgl (1.30332)
               

               
               nbm (1.29122)
               

               
               ecc (1.26539)
               

               
               mas (1.26183)
               

               
               cag (1.20956)
               

               
               nmm (1.19522)
               

               
               nje (1.16144)
               

               
               sug (1.14562)
               

               
               sag (1.09629)
               

               
               fce (1.08637)
               

               
               mgm (1.08206)
               

               
               gul (1.06553)
               

               
               tes (1.03907)
               

               
               pro (1.02407)
               

               
               mcp (1.02389)
               

               
               ese (1.01202)
               

               
               vin (0.997672)
               

               
               fcc (0.988924)
               

               
               cly (0.965135)
               

               
               mga (0.96123)
               

               
               nca (0.958117)
               

               
               ute (0.929491)
               

               
               cov (0.925069)
               

               
               ece (0.917221)
               

               
               sme (0.91631)
               

               
               lun (0.902935)
               

               
               rec (0.865351)
               

               
               cki (0.826173)
               

               
               lyg (0.798616)
               

               
               cli (0.764059)
               

               
               sto (0.719295)
               

               
               fbs (0.701385)
               

               
               jej (0.692452)
               

               
               nms (0.641574)
               

               
               isp (0.601504)
               

               
               ebs (0.591506)
               

               
               aor (0.585823)
               

               
               cst (0.560146)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               ctl (0.459207)
               

               
               spc (0.453463)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               tra (0.369276)
               

               
               duo (0.345602)
               

               
               fco (0.314416)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               pan (0.23596)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               clu (0.119646)

Expressed library(ies): 88 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (4.34869)
               

               
               ova (3.35744)
               

               
               bla (3.35737)
               

               
               eep (3.30923)
               

               
               eru (3.12125)
               

               
               ssp (3.11695)
               

               
               nco (2.74947)
               

               
               elu (2.6975)
               

               
               hea (2.45399)
               

               
               ldo (2.32806)
               

               
               ill (2.2827)
               

               
               med (2.20879)
               

               
               thg (2.15545)
               

               
               lnt (2.13462)
               

               
               mgp (2.07612)
               

               
               fat (2.06398)
               

               
               eye (2.04604)
               

               
               che (2.04471)
               

               
               cut (2.03908)
               

               
               nep (2.02317)
               

               
               cga (1.95367)
               

               
               ton (1.755)
               

               
               sin (1.74948)
               

               
               nlu (1.72513)
               

               
               pty (1.71257)
               

               
               ste (1.6225)
               

               
               col (1.56006)
               

               
               eli (1.51814)
               

               
               cje (1.48711)
               

               
               jca (1.48148)
               

               
               csp (1.45068)
               

               
               fli (1.42017)
               

               
               csk (1.40746)
               

               
               fty (1.40672)
               

               
               ski (1.32062)
               

               
               pgl (1.30332)
               

               
               nbm (1.29122)
               

               
               ecc (1.26539)
               

               
               mas (1.26183)
               

               
               cag (1.20956)
               

               
               nmm (1.19522)
               

               
               nje (1.16144)
               

               
               sug (1.14562)
               

               
               sag (1.09629)
               

               
               fce (1.08637)
               

               
               mgm (1.08206)
               

               
               gul (1.06553)
               

               
               tes (1.03907)
               

               
               pro (1.02407)
               

               
               mcp (1.02389)
               

               
               ese (1.01202)
               

               
               vin (0.997672)
               

               
               fcc (0.988924)
               

               
               cly (0.965135)
               

               
               mga (0.96123)
               

               
               nca (0.958117)
               

               
               ute (0.929491)
               

               
               cov (0.925069)
               

               
               ece (0.917221)
               

               
               sme (0.91631)
               

               
               lun (0.902935)
               

               
               rec (0.865351)
               

               
               cki (0.826173)
               

               
               lyg (0.798616)
               

               
               cli (0.764059)
               

               
               sto (0.719295)
               

               
               fbs (0.701385)
               

               
               jej (0.692452)
               

               
               nms (0.641574)
               

               
               isp (0.601504)
               

               
               ebs (0.591506)
               

               
               aor (0.585823)
               

               
               cst (0.560146)
               

               
               cmu (0.55918)
               

               
               hlv (0.557025)
               

               
               ctl (0.459207)
               

               
               spc (0.453463)
               

               
               bfe (0.449573)
               

               
               lin (0.436808)
               

               
               tra (0.369276)
               

               
               duo (0.345602)
               

               
               fco (0.314416)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               pan (0.23596)
               

               
               fhi (0.169578)
               

               
               kid (0.129735)
               

               
               clu (0.119646)

	314-501, gnl\|bosTau2\|chr10 (25305279-25305465)
	314-501, gnl\|Hg17\|chr16 (84407669-84407482)
	314-501, gnl\|Mm7\|chr1 (65236464-65236301)

	567-857, gnl\|bosTau2\|chr10 (25305269-25305557)
	567-857, gnl\|Hg17\|chr16 (84407679-84407391)
	567-857, gnl\|Mm7\|chr1 (65236464-65236210)

	910-1311, gnl\|bosTau2\|chr11 (19108455-19108849)
	910-1311, gnl\|Hg17\|chr8 (18285408-18285016)
	910-1311, gnl\|Mm7\|chr2 (60205839-60205443)

	eje (4.34869)
	ova (3.35744)
	bla (3.35737)
	eep (3.30923)
	eru (3.12125)
	ssp (3.11695)
	nco (2.74947)
	elu (2.6975)
	hea (2.45399)
	ldo (2.32806)
	ill (2.2827)
	med (2.20879)
	thg (2.15545)
	lnt (2.13462)
	mgp (2.07612)
	fat (2.06398)
	eye (2.04604)
	che (2.04471)
	cut (2.03908)
	nep (2.02317)
	cga (1.95367)
	ton (1.755)
	sin (1.74948)
	nlu (1.72513)
	pty (1.71257)
	ste (1.6225)
	col (1.56006)
	eli (1.51814)
	cje (1.48711)
	jca (1.48148)
	csp (1.45068)
	fli (1.42017)
	csk (1.40746)
	fty (1.40672)
	ski (1.32062)
	pgl (1.30332)
	nbm (1.29122)
	ecc (1.26539)
	mas (1.26183)
	cag (1.20956)
	nmm (1.19522)
	nje (1.16144)
	sug (1.14562)
	sag (1.09629)
	fce (1.08637)
	mgm (1.08206)
	gul (1.06553)
	tes (1.03907)
	pro (1.02407)
	mcp (1.02389)
	ese (1.01202)
	vin (0.997672)
	fcc (0.988924)
	cly (0.965135)
	mga (0.96123)
	nca (0.958117)
	ute (0.929491)
	cov (0.925069)
	ece (0.917221)
	sme (0.91631)
	lun (0.902935)
	rec (0.865351)
	cki (0.826173)
	lyg (0.798616)
	cli (0.764059)
	sto (0.719295)
	fbs (0.701385)
	jej (0.692452)
	nms (0.641574)
	isp (0.601504)
	ebs (0.591506)
	aor (0.585823)
	cst (0.560146)
	cmu (0.55918)
	hlv (0.557025)
	ctl (0.459207)
	spc (0.453463)
	bfe (0.449573)
	lin (0.436808)
	tra (0.369276)
	duo (0.345602)
	fco (0.314416)
	hyp (0.285673)
	pla (0.267344)
	pan (0.23596)
	fhi (0.169578)
	kid (0.129735)
	clu (0.119646)