Non-Coding RNA Search

Ss1.1-rjca33c_p5.5

Sequence:


               
               AACAAAAGTGAATTTTAATGTTTTGCATTAAAGCTAAAGAAATCGGAAGTGTCATGTTCA
CATAGGGGGAAAGAGGAAATTGTACAAAATGCCTTTGTGAAACCAGGAAGTAGTTTAAGT
TAAAAAAGAAAGACCTAAATTGTTTTGTGTGTGTTTCAATGAAGCCCCATTTAGAATCAT
TCTTTTTTCCATCTTTACCACTTTAAGGAACAGTGTCCATGATGAATGGGAATAGTTTGG
GGAAAACTTTGCCAAACATAGCCCTGATCCGAGCAAGAATATGATTTGGGTCTATCTTTC
AGTTCAGCTTGAATTGCTCTGTTATTGTGCTGTCATTTTTGGAAGATCTCTCTCTTTTTT
TTTTTTTTTTTTTTGCAGAATGCATTGGGAGTTTGGAATGATGTTCATTTCTTCTGTTAA
AGTGGCATTCAGTACTAATTTTTTAAGTGCATCTTGTGTGAAACTCAATAAATTCAATTT
TTATAATCTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAAAGTGAATTTTAATGTTTTGCATTAAAGCTAAAGAAATCGGAAGTGTCATGTTCA
CATAGGGGGAAAGAGGAAATTGTACAAAATGCCTTTGTGAAACCAGGAAGTAGTTTAAGT
TAAAAAAGAAAGACCTAAATTGTTTTGTGTGTGTTTCAATGAAGCCCCATTTAGAATCAT
TCTTTTTTCCATCTTTACCACTTTAAGGAACAGTGTCCATGATGAATGGGAATAGTTTGG
GGAAAACTTTGCCAAACATAGCCCTGATCCGAGCAAGAATATGATTTGGGTCTATCTTTC
AGTTCAGCTTGAATTGCTCTGTTATTGTGCTGTCATTTTTGGAAGATCTCTCTCTTTTTT
TTTTTTTTTTTTTTGCAGAATGCATTGGGAGTTTGGAATGATGTTCATTTCTTCTGTTAA
AGTGGCATTCAGTACTAATTTTTTAAGTGCATCTTGTGTGAAACTCAATAAATTCAATTT
TTATAATCTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               360-492, gnl|bosTau2|chr6 (64131498-64131367)
               

               
               360-492, gnl|Hg17|chr4 (15839320-15839190)
               

               
               360-492, gnl|Mm7|chr5 (43495856-43495731)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               360-492, gnl|bosTau2|chr6 (64131498-64131367)
               

               
               360-492, gnl|Hg17|chr4 (15839320-15839190)
               

               
               360-492, gnl|Mm7|chr5 (43495856-43495731)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               bla (0.124347)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	360-492, gnl\|bosTau2\|chr6 (64131498-64131367)
	360-492, gnl\|Hg17\|chr4 (15839320-15839190)
	360-492, gnl\|Mm7\|chr5 (43495856-43495731)

	fce (0.271592)
	nje (0.16592)
	isp (0.150376)
	ski (0.146735)
	bla (0.124347)
	jca (0.11396)
	eje (0.0988338)