Ss1.1-rjca34c_a24.5.5
|
TGTGTCTCTTTTCATGTAATATATTATTATTCTTCCTTGGTTCTAGACAAATAGATAAAT
ATATTTTTTCAGGAAATAGTGTGATATGATACTCCCGTTTGAAGTTGGGTGGGTGATGGA
GTGAGTGCATTTTTGTGTGGCTGAGTGGAGTTTTCGCCCCCTTCTCTTCGTCCCGTTCCT
GGTGCCTTCTGAGCGGGCTGGAGAACCTTCTCTCTAGCTTTTGCTTTGAGCCCAGCTGGG
GTTCCTTCCTTCGCTGTCTCCAAATGGAAGGGAACATTGGAGAGAGAGCTGCCCTCTGCA
GTAGGGCAGCCGCTAGCCACATGTGGTGAGTGGAATCAATTAAAATTACATGGAGTTGAG
TGTTCTTTCCTCAGTTACACTAACCACATTTCAAGGGCTCAGCGGCCGTGTGTGGCTGGT
GGCTGCTTCTGTACCAGATACGCCCAGGAGGGCCCCGTGGGCATCTGTGGGACAGCGCAG
CTAGAGAACTAAACTGGTTCAACAAGTCACAGCCCCCACCTTGGCTGGGGTGACCTTTGT
CTCCCTGGACAAAGGGGAATGGGGGAGGGCTGATCAGGCCCTGGCTCTGGGGCCTGATGA
GCCTTCCCCTCCAGGGAGGAGAGGCCTGGCGGCTTAACCTGGGCAGGCTGCCTCTCCTGA
CCCCATTGGCTGGGATCAGGGGTGGGGTCACCCTCGCTTCCTTCACCTTTCACCCCCACC
ACCCCGGGTCCCAGCTGGCTGGGTCCTCTTCCCCCCCTCCCATGTCCCTTCCCTCCAGCC
ATGTTGGGAGCAAGCACCTCACACTCTTGTCTGTTACTGATTTTTTGATAAAAAGATAAT
AAAACCTGGTACTTTCTAGAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGTGTCTCTTTTCATGTAATATATTATTATTCTTCCTTGGTTCTAGACAAATAGATAAAT
ATATTTTTTCAGGAAATAGTGTGATATGATACTCCCGTTTGAAGTTGGGTGGGTGATGGA
GTGAGTGCATTTTTGTGTGGCTGAGTGGAGTTTTCGCCCCCTTCTCTTCGTCCCGTTCCT
GGTGCCTTCTGAGCGGGCTGGAGAACCTTCTCTCTAGCTTTTGCTTTGAGCCCAGCTGGG
GTTCCTTCCTTCGCTGTCTCCAAATGGAAGGGAACATTGGAGAGAGAGCTGCCCTCTGCA
GTAGGGCAGCCGCTAGCCACATGTGGTGAGTGGAATCAATTAAAATTACATGGAGTTGAG
TGTTCTTTCCTCAGTTACACTAACCACATTTCAAGGGCTCAGCGGCCGTGTGTGGCTGGT
GGCTGCTTCTGTACCAGATACGCCCAGGAGGGCCCCGTGGGCATCTGTGGGACAGCGCAG
CTAGAGAACTAAACTGGTTCAACAAGTCACAGCCCCCACCTTGGCTGGGGTGACCTTTGT
CTCCCTGGACAAAGGGGAATGGGGGAGGGCTGATCAGGCCCTGGCTCTGGGGCCTGATGA
GCCTTCCCCTCCAGGGAGGAGAGGCCTGGCGGCTTAACCTGGGCAGGCTGCCTCTCCTGA
CCCCATTGGCTGGGATCAGGGGTGGGGTCACCCTCGCTTCCTTCACCTTTCACCCCCACC
ACCCCGGGTCCCAGCTGGCTGGGTCCTCTTCCCCCCCTCCCATGTCCCTTCCCTCCAGCC
ATGTTGGGAGCAAGCACCTCACACTCTTGTCTGTTACTGATTTTTTGATAAAAAGATAAT
AAAACCTGGTACTTTCTAGAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
586-639, + strand, RNAmicro p=0.999742 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
586-639, + strand, RNAmicro p=0.999742 |
|
526-814, POSM0100004_H04 porcine skeletal muscle cDNA library (PoSM) Sus
(gb|BM189955.1|), blast E-value=0, identity=96.19% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
526-814, POSM0100004_H04 porcine skeletal muscle cDNA library (PoSM) Sus
(gb|BM189955.1|), blast E-value=0, identity=96.19% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
amn (0.417711) |
|
cov (0.264306) |
|
med (0.232504) |
|
nlu (0.191681) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cje (0.165235) |
|
nco (0.161734) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
jca (0.11396) |
|
cty (0.10408) |
|
amn (0.417711) |
|
cov (0.264306) |
|
med (0.232504) |
|
nlu (0.191681) |
|
duo (0.172801) |
|
eye (0.170503) |
|
cje (0.165235) |
|
nco (0.161734) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
jca (0.11396) |
|
cty (0.10408) |