Non-Coding RNA Search

Ss1.1-rjca34c_c6.5

Sequence:


               
               GGTTACTGGGCGCCTCTTTGCGCGCGGGAAGATGGCCGAGCAGGTGACTAAGTCGGTGCT
GTTCGTGTGTCTGGGTAACATCTGTCGATCACCCATCGCAGAAGCGGTTTTCAGAAAACT
CGTAACTGATCAAAACGTTTCAGATAATTGGAGGATAGACAGTGCAGCGACGTCCACGTA
TGAACTAGGAAACCCTCCTGATTACCGGGGGCAGGCTTGCATGAAGAGGCATGGTGTCCC
CATGAGTCACATTGCCCGGCAGATTACCAAAGAAGACTTTGCCACTTTTGATTACATACT
GTGTATGGATGAAAGCAACCTGAGAGATTTGAATAGAAAAGGTAATCAAGTTAAAAACTG
CAGAGCGAAAATTGAGCTACTTGGGAGCTACGATCCACAAAAACAGCTCATTATTGAGGA
CCCCTATTATGGCAACGACTCCGACTTCGAGGCCGTCTACCAGCAGTGCGTGCGGTGCTG
CAGAGCCTTCCTCGAGAAGGTGCGCTGAGCCGGCCGCCTCCCGCCGCGGCCCCTTCTCAG
TCCAGTGGCACGGCGAGCTGCCCCCAGCGCAGGGTCACAGCCCTTTCCTCTGTCGACTCA
CTGTTTCTTACCCTAAAAGACCATTGTAGATGGACATCAGCTGTGTTTTACAGAAACTAG
TAAATAAAATTTTTGATCGAGAAAAAAAAAAAAAAATTCTTCGAAGAGTTGCCCCACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTACTGGGCGCCTCTTTGCGCGCGGGAAGATGGCCGAGCAGGTGACTAAGTCGGTGCT
GTTCGTGTGTCTGGGTAACATCTGTCGATCACCCATCGCAGAAGCGGTTTTCAGAAAACT
CGTAACTGATCAAAACGTTTCAGATAATTGGAGGATAGACAGTGCAGCGACGTCCACGTA
TGAACTAGGAAACCCTCCTGATTACCGGGGGCAGGCTTGCATGAAGAGGCATGGTGTCCC
CATGAGTCACATTGCCCGGCAGATTACCAAAGAAGACTTTGCCACTTTTGATTACATACT
GTGTATGGATGAAAGCAACCTGAGAGATTTGAATAGAAAAGGTAATCAAGTTAAAAACTG
CAGAGCGAAAATTGAGCTACTTGGGAGCTACGATCCACAAAAACAGCTCATTATTGAGGA
CCCCTATTATGGCAACGACTCCGACTTCGAGGCCGTCTACCAGCAGTGCGTGCGGTGCTG
CAGAGCCTTCCTCGAGAAGGTGCGCTGAGCCGGCCGCCTCCCGCCGCGGCCCCTTCTCAG
TCCAGTGGCACGGCGAGCTGCCCCCAGCGCAGGGTCACAGCCCTTTCCTCTGTCGACTCA
CTGTTTCTTACCCTAAAAGACCATTGTAGATGGACATCAGCTGTGTTTTACAGAAACTAG
TAAATAAAATTTTTGATCGAGAAAAAAAAAAAAAAATTCTTCGAAGAGTTGCCCCACTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62089262|dbj|BAD93075.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62089262|dbj|BAD93075.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-543, gnl|bosTau2|chr11 (8844431-8844951)
               

               
               20-543, gnl|Mm7|chrX (109768015-109767493)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-543, gnl|bosTau2|chr11 (8844431-8844951)
               

               
               20-543, gnl|Mm7|chrX (109768015-109767493)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               cki (3.46993)
               

               
               cst (2.52066)
               

               
               che (2.04471)
               

               
               cut (1.86916)
               

               
               cje (1.48711)
               

               
               csk (0.844476)
               

               
               elu (0.770713)
               

               
               sto (0.719295)
               

               
               col (0.585023)
               

               
               nlu (0.575043)
               

               
               ton (0.526501)
               

               
               nco (0.485201)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (3.46993)
               

               
               cst (2.52066)
               

               
               che (2.04471)
               

               
               cut (1.86916)
               

               
               cje (1.48711)
               

               
               csk (0.844476)
               

               
               elu (0.770713)
               

               
               sto (0.719295)
               

               
               col (0.585023)
               

               
               nlu (0.575043)
               

               
               ton (0.526501)
               

               
               nco (0.485201)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               med (0.348756)
               

               
               eje (0.296501)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               nca (0.273748)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	20-543, gnl\|bosTau2\|chr11 (8844431-8844951)
	20-543, gnl\|Mm7\|chrX (109768015-109767493)

	cki (3.46993)
	cst (2.52066)
	che (2.04471)
	cut (1.86916)
	cje (1.48711)
	csk (0.844476)
	elu (0.770713)
	sto (0.719295)
	col (0.585023)
	nlu (0.575043)
	ton (0.526501)
	nco (0.485201)
	eru (0.360144)
	fbs (0.350693)
	med (0.348756)
	eje (0.296501)
	cte (0.29274)
	hlv (0.278513)
	nca (0.273748)
	ste (0.270416)
	pla (0.267344)
	ece (0.229305)
	jca (0.22792)
	mas (0.210305)
	fcc (0.197785)
	nep (0.183925)
	sag (0.182715)
	fty (0.17584)
	rec (0.17307)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	fat (0.147427)
	lnt (0.142308)
	ute (0.132784)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	eep (0.122564)
	ebs (0.118301)
	nbm (0.0993246)
	jej (0.0989218)
	ldo (0.0970026)