Non-Coding RNA Search

Ss1.1-rjca34c_d2.5

Sequence:


               
               CATGAAGAACAGCACCAAGCACCTTGTGAATACAGAATTCTTAAAACACATCAAATACGA
TTCCCAGAAATCAGAACAGTTATAAAACTTGAGCTTTTTAAAATGGAAACTGAAAAGAGC
AGTATTTGAGGTTCGCTTCTTTTCTGATCTGAATATTTTGCTCACTCAATATTTAGCCAT
AAAGGAGTAGAGAATGGTAAATTGTGTTTCAGTATTGCTTTCCCTGTCCCCATATGTTCA
GCTCCTTATTTACATTCACACTAAATTTCGGTGCCTTCCAGCACGTTGGTGGCAGGCACT
TTTCTGGAACACTAGGCAATAATTTAGTCAATGCATTCAGAGCTCAGATTTTCAACTGAA
ACTTAGGTGAAAAGGCTCTTGTCCTCTTGCTGCATAGGTACTTTGAAATGTCTATATAAC
GAAGCTGTTTTCATATCCAGGCTTTAGAAAGTCGTTACTATATAATACCTTTATTGATCT
ACCTACTCTGCTTAGGACTTTTCAGAGCTAACTGTGCCCCCAAATGCATGGAAACTAGGC
CAGGGAATGTAAGGGGTCAAGTATAGCTGTTCCCACTGTTGGATAATGAATTATCTCCCC
TAATTTGCAAGGAGGGTGTAAGGAAAACCCAATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAAGAACAGCACCAAGCACCTTGTGAATACAGAATTCTTAAAACACATCAAATACGA
TTCCCAGAAATCAGAACAGTTATAAAACTTGAGCTTTTTAAAATGGAAACTGAAAAGAGC
AGTATTTGAGGTTCGCTTCTTTTCTGATCTGAATATTTTGCTCACTCAATATTTAGCCAT
AAAGGAGTAGAGAATGGTAAATTGTGTTTCAGTATTGCTTTCCCTGTCCCCATATGTTCA
GCTCCTTATTTACATTCACACTAAATTTCGGTGCCTTCCAGCACGTTGGTGGCAGGCACT
TTTCTGGAACACTAGGCAATAATTTAGTCAATGCATTCAGAGCTCAGATTTTCAACTGAA
ACTTAGGTGAAAAGGCTCTTGTCCTCTTGCTGCATAGGTACTTTGAAATGTCTATATAAC
GAAGCTGTTTTCATATCCAGGCTTTAGAAAGTCGTTACTATATAATACCTTTATTGATCT
ACCTACTCTGCTTAGGACTTTTCAGAGCTAACTGTGCCCCCAAATGCATGGAAACTAGGC
CAGGGAATGTAAGGGGTCAAGTATAGCTGTTCCCACTGTTGGATAATGAATTATCTCCCC
TAATTTGCAAGGAGGGTGTAAGGAAAACCCAATCTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-560, gnl|bosTau2|chr20 (1467019-1467568)
               

               
               1-560, gnl|Hg17|chr5 (171571109-171570471)
               

               
               1-560, gnl|Mm7|chr11 (32468818-32469351)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-560, gnl|bosTau2|chr20 (1467019-1467568)
               

               
               1-560, gnl|Hg17|chr5 (171571109-171570471)
               

               
               1-560, gnl|Mm7|chr11 (32468818-32469351)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-560, gnl\|bosTau2\|chr20 (1467019-1467568)
	1-560, gnl\|Hg17\|chr5 (171571109-171570471)
	1-560, gnl\|Mm7\|chr11 (32468818-32469351)