Non-Coding RNA Search

Ss1.1-rjca34c_e9.5

Sequence:


               
               CGCGCGCTCACCCGCGCCGGCCTCTACCGGCTCACGGTGCGCGCCGAGGCGCCGCGCCAC
CAAAGCGTCTTCGTCCTGCTCATCGCCGTGTCCCCCTACCCCTACTGAGGGCCAGCGACC
TCTGACCTCCGGGGTGGAGGGCGGGGAGGAGCCGGCCCCGCCCCCTCCGCTAGGTGGCCG
TTATCCACGCCACCTGCCGTGGCAAGAAACGTCATCTTCTCCCGTCCCATGCGTCAGTAA
GACCTTCAGCAAACAGGACCCTGGGCACAGCCTTGACCCCAGGACAGCAAGAATCGGAGC
TCCCCCACCCGCCCCCTGCCCCGCTCATGGTGGGGGCGCGGAGACCAGCAGGCAGGTGAC
AAAGGCTGCCCTGAGGAGGCAAAGACCACAGGCAGGGCTGGGGTGAAGCCTGGCGGGTTC
TCCAGGCTTGCCCCACGCCCCAAGGGAGCCTGGGCCAGGACACCCAAGGGTAGGGCAGAT
GGCAGCAGCTGTCACCCGCCATACCTAACACTGAATCCTGAACCCGGTGTGTGTATGTAT
ACCATAAAAACCTTTGTTTTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCGCTCACCCGCGCCGGCCTCTACCGGCTCACGGTGCGCGCCGAGGCGCCGCGCCAC
CAAAGCGTCTTCGTCCTGCTCATCGCCGTGTCCCCCTACCCCTACTGAGGGCCAGCGACC
TCTGACCTCCGGGGTGGAGGGCGGGGAGGAGCCGGCCCCGCCCCCTCCGCTAGGTGGCCG
TTATCCACGCCACCTGCCGTGGCAAGAAACGTCATCTTCTCCCGTCCCATGCGTCAGTAA
GACCTTCAGCAAACAGGACCCTGGGCACAGCCTTGACCCCAGGACAGCAAGAATCGGAGC
TCCCCCACCCGCCCCCTGCCCCGCTCATGGTGGGGGCGCGGAGACCAGCAGGCAGGTGAC
AAAGGCTGCCCTGAGGAGGCAAAGACCACAGGCAGGGCTGGGGTGAAGCCTGGCGGGTTC
TCCAGGCTTGCCCCACGCCCCAAGGGAGCCTGGGCCAGGACACCCAAGGGTAGGGCAGAT
GGCAGCAGCTGTCACCCGCCATACCTAACACTGAATCCTGAACCCGGTGTGTGTATGTAT
ACCATAAAAACCTTTGTTTTTACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-453, - strand, RNAz p=0.902656

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-453, - strand, RNAz p=0.902656

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               413-467, + strand, RNAmicro p=0.996274
               

               
               403-527, - strand, RNAmicro p=0.996061

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               413-467, + strand, RNAmicro p=0.996274
               

               
               403-527, - strand, RNAmicro p=0.996061

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-563, gnl|bosTau2|chr11 (81059031-81059621)
               

               
               1-563, gnl|Hg17|chr9 (130338527-130339061)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr11 (81059031-81059621)
               

               
               1-563, gnl|Hg17|chr9 (130338527-130339061)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.34188)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.34188)

	413-467, + strand, RNAmicro p=0.996274
	403-527, - strand, RNAmicro p=0.996061

	1-563, gnl\|bosTau2\|chr11 (81059031-81059621)
	1-563, gnl\|Hg17\|chr9 (130338527-130339061)