Ss1.1-rjca34c_h4.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCCTTCCCCGGCGGTGCTTTATCACACCAAGGTGGCCTACGACCCTGAAGGCATCCTGG GGACCATCAACTCCATCTTGATGGCATATTTAGGAGTTCAGGCAGGGAAAATACTCTTGT ATTACAAGGATCGGACCAAAGGCATCCTGATCAGATTCGCCGTCTGGGGGTGTTTTCTGG GGCTTATTTCTGTTGCTTTGACGAAAGCTTCTGAAAATGAAGGCTTTATTCCAGTGAACA AAAATCTCTGGTCCACCTCCTACGTCACCACGCTGAGCTCCTTTGCCTTCTTGATCCTGC TGGTCCTGTACCCCATTGTGGATGTGAAGGGACTGTGGACAGGAACCCCGTTCTTCTACC CGGGCATGAACTCGATCCTGGTGTACGTGGGCCACGAGGTGTTTGCCAACTACTTCCCCT TCCAGTGGAGGCTGGGGGACAGCCAGTCCCACAGGGAGCATCTGGTGCAGAACATAGTCG CCACTGCACTCTGGGTGCTCATCGCCTACGTCCTCTACAAGAAGAACGTCTTTTGGAAAA TCTGAGGCTCCGGCTGAGATGAGATGTGTGACTGGCAGACGACAGGGCCTGGGGAATCAT TAAAAGGAGTCATTCGTTAAAACAGCGGCTGGGCTGTGAATTTCCAGATTATCAACAAGG AGGCTGACGTGGCTCCTGCGAATCTGCCTGTGGACGTGGGACTTAAATACCTGAAACGTA ATTGTCTTGTCTTCTCCATCTTCTATGGAAATGGATGCATTTGGAACGTCTCATTTAATT TTTCAGAAGGGAATTCACCAGGCCATTTTGCTTCTGTGACGGGCAACACAATCCACGGTC TGCTGCTCCCTGATGTTCTTTGCCTGCACCTGCCTCTCCTCTCGTATCCACACCGACCAA GGTGCCACCTTCGCCGCCGTGGCTGGCTGTGACGCTCGCTGGGTGTATGTGCAGTAGCGC AGTCTAATAGATTTTTGGTGAAGTACAGCTTAATAGTTCAAGAAAGTCCAAGTGATTTCC TTTCAGCTCTGTAGGGCACCGGTGGGGCCAAATAAAAAGCCTTTCTTTTTTTTTTAAGCA GTAGGGAAGAAACTTTATTAATTGAATGACAGCATGTTTTTTAAAAGGCTCAAATTAGGG AAAACGCTGTAGGATACGCACCAACCATAGCGATGTTGTATCAGAAACCAGAGTGGGGGC TCCCGCTGTGGTGCAACAGGGTCAGCAGCATCTCTGGAGCCCTAGGATGCAAGTTCAATC CCTGGCCCCGAACAGTGGGTTAAAGGATCTGGCGTTGCTACAGTTGTGGTGTAGGTGCAA CTGTGGCTCAGATCTGACCCCTGGCCTGGCCAAAAAAATGAAAACAAACCAAAAAACCCA GGTTGAATTAAAGTTATGATCATATTCAAAAAAGGCTTTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCCTTCCCCGGCGGTGCTTTATCACACCAAGGTGGCCTACGACCCTGAAGGCATCCTGG GGACCATCAACTCCATCTTGATGGCATATTTAGGAGTTCAGGCAGGGAAAATACTCTTGT ATTACAAGGATCGGACCAAAGGCATCCTGATCAGATTCGCCGTCTGGGGGTGTTTTCTGG GGCTTATTTCTGTTGCTTTGACGAAAGCTTCTGAAAATGAAGGCTTTATTCCAGTGAACA AAAATCTCTGGTCCACCTCCTACGTCACCACGCTGAGCTCCTTTGCCTTCTTGATCCTGC TGGTCCTGTACCCCATTGTGGATGTGAAGGGACTGTGGACAGGAACCCCGTTCTTCTACC CGGGCATGAACTCGATCCTGGTGTACGTGGGCCACGAGGTGTTTGCCAACTACTTCCCCT TCCAGTGGAGGCTGGGGGACAGCCAGTCCCACAGGGAGCATCTGGTGCAGAACATAGTCG CCACTGCACTCTGGGTGCTCATCGCCTACGTCCTCTACAAGAAGAACGTCTTTTGGAAAA TCTGAGGCTCCGGCTGAGATGAGATGTGTGACTGGCAGACGACAGGGCCTGGGGAATCAT TAAAAGGAGTCATTCGTTAAAACAGCGGCTGGGCTGTGAATTTCCAGATTATCAACAAGG AGGCTGACGTGGCTCCTGCGAATCTGCCTGTGGACGTGGGACTTAAATACCTGAAACGTA ATTGTCTTGTCTTCTCCATCTTCTATGGAAATGGATGCATTTGGAACGTCTCATTTAATT TTTCAGAAGGGAATTCACCAGGCCATTTTGCTTCTGTGACGGGCAACACAATCCACGGTC TGCTGCTCCCTGATGTTCTTTGCCTGCACCTGCCTCTCCTCTCGTATCCACACCGACCAA GGTGCCACCTTCGCCGCCGTGGCTGGCTGTGACGCTCGCTGGGTGTATGTGCAGTAGCGC AGTCTAATAGATTTTTGGTGAAGTACAGCTTAATAGTTCAAGAAAGTCCAAGTGATTTCC TTTCAGCTCTGTAGGGCACCGGTGGGGCCAAATAAAAAGCCTTTCTTTTTTTTTTAAGCA GTAGGGAAGAAACTTTATTAATTGAATGACAGCATGTTTTTTAAAAGGCTCAAATTAGGG AAAACGCTGTAGGATACGCACCAACCATAGCGATGTTGTATCAGAAACCAGAGTGGGGGC TCCCGCTGTGGTGCAACAGGGTCAGCAGCATCTCTGGAGCCCTAGGATGCAAGTTCAATC CCTGGCCCCGAACAGTGGGTTAAAGGATCTGGCGTTGCTACAGTTGTGGTGTAGGTGCAA CTGTGGCTCAGATCTGACCCCTGGCCTGGCCAAAAAAATGAAAACAAACCAAAAAACCCA GGTTGAATTAAAGTTATGATCATATTCAAAAAAGGCTTTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 355-645, gnl|bosTau2|chr27 (24254883-24255168) | |
| 355-645, gnl|canFam2|chr16 (25597585-25597386) | |
| 355-645, gnl|danRer3|chr1 (10436730-10436529) | |
| 355-645, gnl|dasNov1|scaffold_38526 (15660-15859) | |
| 355-645, gnl|echTel1|scaffold_321995 (20936-20739) | |
| 355-645, gnl|fr1|chrUn (195555819-195556011) | |
| 355-645, gnl|galGal2|chr4 (34626326-34626124) | |
| 355-645, gnl|hg17|chr8 (43173672-43173874) | |
| 355-645, gnl|Hg17|chr8 (43173676-43173982) | |
| 355-645, gnl|loxAfr1|scaffold_19783 (8522-8323) | |
| 355-645, gnl|mm7|chr8 (24701816-24701620) | |
| 355-645, gnl|Mm7|chr8 (24701806-24701536) | |
| 355-645, gnl|monDom2|scaffold_1 (78774687-78774476) | |
| 355-645, gnl|oryCun1|scaffold_204668 (57230-57429) | |
| 355-645, gnl|panTro1|chr7 (44655906-44656108) | |
| 355-645, gnl|rheMac2|chr8 (43785208-43785410) | |
| 355-645, gnl|rn3|chr16 (70511747-70511944) | |
| 355-645, gnl|tetNig1|chrUn_random (111805380-111805565) | |
| 355-645, gnl|xenTro1|scaffold_267 (794538-794740) | |
| 672-1065, gnl|bosTau2|chr27 (24255218-24255605) | |
| 672-1065, gnl|Hg17|chr8 (43174033-43174437) | |
| 672-1065, gnl|Mm7|chr8 (24701492-24701011) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 355-645, gnl|bosTau2|chr27 (24254883-24255168) | |
| 355-645, gnl|canFam2|chr16 (25597585-25597386) | |
| 355-645, gnl|danRer3|chr1 (10436730-10436529) | |
| 355-645, gnl|dasNov1|scaffold_38526 (15660-15859) | |
| 355-645, gnl|echTel1|scaffold_321995 (20936-20739) | |
| 355-645, gnl|fr1|chrUn (195555819-195556011) | |
| 355-645, gnl|galGal2|chr4 (34626326-34626124) | |
| 355-645, gnl|hg17|chr8 (43173672-43173874) | |
| 355-645, gnl|Hg17|chr8 (43173676-43173982) | |
| 355-645, gnl|loxAfr1|scaffold_19783 (8522-8323) | |
| 355-645, gnl|mm7|chr8 (24701816-24701620) | |
| 355-645, gnl|Mm7|chr8 (24701806-24701536) | |
| 355-645, gnl|monDom2|scaffold_1 (78774687-78774476) | |
| 355-645, gnl|oryCun1|scaffold_204668 (57230-57429) | |
| 355-645, gnl|panTro1|chr7 (44655906-44656108) | |
| 355-645, gnl|rheMac2|chr8 (43785208-43785410) | |
| 355-645, gnl|rn3|chr16 (70511747-70511944) | |
| 355-645, gnl|tetNig1|chrUn_random (111805380-111805565) | |
| 355-645, gnl|xenTro1|scaffold_267 (794538-794740) | |
| 672-1065, gnl|bosTau2|chr27 (24255218-24255605) | |
| 672-1065, gnl|Hg17|chr8 (43174033-43174437) | |
| 672-1065, gnl|Mm7|chr8 (24701492-24701011) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.182715) | |
| kid (0.129735) | |
| jca (0.11396) |