Non-Coding RNA Search

Ss1.1-rjej02b_p11.5

Sequence:


               
               CCCAGTCCAACCCTGAGTCCCTTGACTTTTATATTCTGACTCCAAGGTATTGTTCAGACC
TCAGCTCCTGGGGGCCGGCCCCTGGAGTCCCCCTCCCTGGTAGCCTCTAACCAGCATTCC
CAGACACCTGAGGCAGATAGATGGATGGGCAGGTGGGCAGGGGGGTGGCTGGGGCTAGGC
CAGCACCATTCCAGAGACACGGCCAGTGCATATGCAAACTGGGGGAAATCTCCTCTCCCT
TCTCTCCCCAGTTGTGGCCCTGGCCAGGCCATGCTACACTAACCTCACCTCCCTGTCTTA
CTCTTTCTCCTCCTTCCCCCTTTCTCCTGCCACCCTCTTCCCTTTGCCTCCTTCTCCTCC
CGTCCCCTGACTATTCCACCCAGGAGGAGGAAACTTCACATAGCTGTGCTCACAGTTTTT
TATTTTAAATGAATTTGGTTGGGGAGCTGAGCAGGGCTCCCTGTGATCTGAAGAAAGCTT
TTGGTGCTTGTCCTCACTACCACTTTGACCTTCCCTCCCTATCCTGCCCTGTCTCCTTTC
CTCCTCCTGGGTTCATGTTGTAATAAAAGAAGATTGTTGGTGTGTAATTAATTTGTTCAA
AGGAAAAAAAAAAAAGCAAAACAAGAAACTTGGTTCCAACTGAAGCCTATTTTAATTTTA
TTTTATTATTTTCCTCTTGTTAGAAATAAAACCCTTAGCAACATTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGTCCAACCCTGAGTCCCTTGACTTTTATATTCTGACTCCAAGGTATTGTTCAGACC
TCAGCTCCTGGGGGCCGGCCCCTGGAGTCCCCCTCCCTGGTAGCCTCTAACCAGCATTCC
CAGACACCTGAGGCAGATAGATGGATGGGCAGGTGGGCAGGGGGGTGGCTGGGGCTAGGC
CAGCACCATTCCAGAGACACGGCCAGTGCATATGCAAACTGGGGGAAATCTCCTCTCCCT
TCTCTCCCCAGTTGTGGCCCTGGCCAGGCCATGCTACACTAACCTCACCTCCCTGTCTTA
CTCTTTCTCCTCCTTCCCCCTTTCTCCTGCCACCCTCTTCCCTTTGCCTCCTTCTCCTCC
CGTCCCCTGACTATTCCACCCAGGAGGAGGAAACTTCACATAGCTGTGCTCACAGTTTTT
TATTTTAAATGAATTTGGTTGGGGAGCTGAGCAGGGCTCCCTGTGATCTGAAGAAAGCTT
TTGGTGCTTGTCCTCACTACCACTTTGACCTTCCCTCCCTATCCTGCCCTGTCTCCTTTC
CTCCTCCTGGGTTCATGTTGTAATAAAAGAAGATTGTTGGTGTGTAATTAATTTGTTCAA
AGGAAAAAAAAAAAAGCAAAACAAGAAACTTGGTTCCAACTGAAGCCTATTTTAATTTTA
TTTTATTATTTTCCTCTTGTTAGAAATAAAACCCTTAGCAACATTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               208-442, - strand, RNAz p=0.997514

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-442, - strand, RNAz p=0.997514

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               208-708, gnl|bosTau2|chr25 (13949110-13949602)
               

               
               208-708, gnl|Hg17|chrX (53104842-53104367)
               

               
               208-708, gnl|Mm7|chrX (147032064-147032549)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-708, gnl|bosTau2|chr25 (13949110-13949602)
               

               
               208-708, gnl|Hg17|chrX (53104842-53104367)
               

               
               208-708, gnl|Mm7|chrX (147032064-147032549)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               amn (0.417711)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               nbm (0.198649)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cga (0.279096)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               nbm (0.198649)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	208-708, gnl\|bosTau2\|chr25 (13949110-13949602)
	208-708, gnl\|Hg17\|chrX (53104842-53104367)
	208-708, gnl\|Mm7\|chrX (147032064-147032549)

	amn (0.417711)
	cga (0.279096)
	fce (0.271592)
	pgl (0.236967)
	nbm (0.198649)
	mcp (0.170648)
	nje (0.16592)
	csp (0.161186)
	hlv (0.139256)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)
	cty (0.10408)
	jej (0.0989218)