Non-Coding RNA Search

Ss1.1-rjej03b_b11.5

Sequence:


               
               GGTATACGCTCCGCCTCGCGTTCGGTGTGAGACGTAGAACTCAGCGACTGAGGCCACGAG
CGAGATGCCTGTGGCCGTGGGGCCTTACGGACAGTCCCAGCCAAGCTGCTTTGACCGCGT
GAAGATGGGCTTTGTGATGGGTTGCGCCGTGGGCATGGCGGCAGGGGCGCTCTTCGGCAC
CTTTTCCTGTCTCAGGATCGGAATGCGGGGTCGGGAGCTGATGGGCGGCATCGGGAAAAC
CATGATGCAGAGTGGCGGCACCTTTGGCACATTCATGGCCATCGGGATGGGCATCCGATG
CTAACCAGGGCAGTGGTTGCCCACTACATCCAGCCTCTCCAATCAGTCCCAGCCCATGTA
CTATAATAAAACAAACCTTTGAATATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTATACGCTCCGCCTCGCGTTCGGTGTGAGACGTAGAACTCAGCGACTGAGGCCACGAG
CGAGATGCCTGTGGCCGTGGGGCCTTACGGACAGTCCCAGCCAAGCTGCTTTGACCGCGT
GAAGATGGGCTTTGTGATGGGTTGCGCCGTGGGCATGGCGGCAGGGGCGCTCTTCGGCAC
CTTTTCCTGTCTCAGGATCGGAATGCGGGGTCGGGAGCTGATGGGCGGCATCGGGAAAAC
CATGATGCAGAGTGGCGGCACCTTTGGCACATTCATGGCCATCGGGATGGGCATCCGATG
CTAACCAGGGCAGTGGTTGCCCACTACATCCAGCCTCTCCAATCAGTCCCAGCCCATGTA
CTATAATAAAACAAACCTTTGAATATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               CT052_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               CT052_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               225-344, - strand, RNAz p=0.661476

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-344, - strand, RNAz p=0.661476

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               185-387, gnl|bosTau2|chr13 (46386225-46386021)
               

               
               185-387, gnl|Hg17|chr20 (33752127-33752318)
               

               
               185-387, gnl|Mm7|chr2 (155886453-155886635)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-387, gnl|bosTau2|chr13 (46386225-46386021)
               

               
               185-387, gnl|Hg17|chr20 (33752127-33752318)
               

               
               185-387, gnl|Mm7|chr2 (155886453-155886635)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

Help | Less info


               
               cov (0.660764)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               eru (0.360144)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.660764)
               

               
               nep (0.551775)
               

               
               fce (0.543183)
               

               
               ton (0.526501)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               eru (0.360144)
               

               
               fhi (0.339155)
               

               
               nje (0.33184)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               nca (0.273748)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	185-387, gnl\|bosTau2\|chr13 (46386225-46386021)
	185-387, gnl\|Hg17\|chr20 (33752127-33752318)
	185-387, gnl\|Mm7\|chr2 (155886453-155886635)

	cov (0.660764)
	nep (0.551775)
	fce (0.543183)
	ton (0.526501)
	cag (0.453583)
	amn (0.417711)
	nlu (0.383362)
	eru (0.360144)
	fhi (0.339155)
	nje (0.33184)
	eje (0.296501)
	pty (0.285429)
	nca (0.273748)
	ecc (0.23007)
	jca (0.22792)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	jej (0.197844)
	ill (0.175593)
	fbs (0.175346)
	nco (0.161734)
	cli (0.152812)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	sug (0.127291)
	ese (0.126502)
	ebs (0.118301)
	nbm (0.0993246)