Ss1.1-rjej03b_f10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGACCCCTCGGTGGCGCAAGGGCTTGTGGGAAAGTTGGAGAAAACCAAGTCTCTGGCC CAGCAGTTGTTGCTGGAGGCCACTCAAACCGATCTTGAAGCAGATAGGGCTTATCAGCAG AGCCTTCGTCTTCTCAATTCTGCGTCTCAGCTGCAAGGGGTCAATCATCAGTCCTTTCAG GTAGAAGTGAAGAGGATCAAAGAAAAAGCTGATTCTCTCTCAAGCCTGGTGACAGCGTTT GGATGAGTTCGAGCACGTGCAAAGCAATCTGGGAAACTGGGAAGAAGAAACCCGGAAGCT CTTGCAGAATGGGAAGAATGGGAGACAGAAATCAGATCAGCTGCTTTCCCGGGCCAACCT TGCTAAAAGCAGAGCCCAAGAAGCACTAAGTATGGGGAATGCCACTTTTTATGAAGTTGA GAACATCTTAAAGAACCTCAGAGAGTTTGACCTGCAGGTTGAGGACAGAAAAGCAGAAGC TGAAGAGGCCATGAAGAGACTCTCCTACATCAGCCAGAAGGTTGCAGAGGCCAGCGACAA GACCCAGCGAGCAGAAACGGCCCTGGGCGGTGCTGCTACCGACGCCCAGAGGGCGAAGCA CACAGCCAGGGAGGCCCTGGGGATCACCGGCAAGATGGAACAGGAGATCAGGAGTCTGAT CTTGAAGGCCAACGTGACCGCAGATGGAGCCTTGGCCATGGAGAAGGGACTGGCCACTGT GAAGAGCGAGATGCAGGACGTGGAAGGAGAGCTGGCGAGGAAGGAGCGGGAGTTCGACGC GGACATGGCCGCGGTGCAGACGGTAATTACAGAAGCCCAAACGGTTGATAACAGAGCCAA GAATGCTGGAGTTACGATCCAAGACACTCTCAACACGTTGGACGGCATCCTACACCTAAT AGACCAGCCTGGCAGTGTGGATGAAGAAGGGCTGATCTTACTCGAGCAGAAGCTCTTCCG CGCCAAGACCCAGATCAACAGCCAGCTGCGGCCGTTGATGTCAGAGCTGGAAGAGAGGGC GCTTCGGCAGAGGGGCCAGCTCCGCTCGCTGGAGATGAGCATAGACGGGATTCTGGCGGA TGTGAAGAACCTGGAGCACATTAGGGACAACCTGCCCCCAGGCTGCTACAATACGCAGGC TCTTGAGCAACACTGAGGCCGCCTTCGAAATTTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGACCCCTCGGTGGCGCAAGGGCTTGTGGGAAAGTTGGAGAAAACCAAGTCTCTGGCC CAGCAGTTGTTGCTGGAGGCCACTCAAACCGATCTTGAAGCAGATAGGGCTTATCAGCAG AGCCTTCGTCTTCTCAATTCTGCGTCTCAGCTGCAAGGGGTCAATCATCAGTCCTTTCAG GTAGAAGTGAAGAGGATCAAAGAAAAAGCTGATTCTCTCTCAAGCCTGGTGACAGCGTTT GGATGAGTTCGAGCACGTGCAAAGCAATCTGGGAAACTGGGAAGAAGAAACCCGGAAGCT CTTGCAGAATGGGAAGAATGGGAGACAGAAATCAGATCAGCTGCTTTCCCGGGCCAACCT TGCTAAAAGCAGAGCCCAAGAAGCACTAAGTATGGGGAATGCCACTTTTTATGAAGTTGA GAACATCTTAAAGAACCTCAGAGAGTTTGACCTGCAGGTTGAGGACAGAAAAGCAGAAGC TGAAGAGGCCATGAAGAGACTCTCCTACATCAGCCAGAAGGTTGCAGAGGCCAGCGACAA GACCCAGCGAGCAGAAACGGCCCTGGGCGGTGCTGCTACCGACGCCCAGAGGGCGAAGCA CACAGCCAGGGAGGCCCTGGGGATCACCGGCAAGATGGAACAGGAGATCAGGAGTCTGAT CTTGAAGGCCAACGTGACCGCAGATGGAGCCTTGGCCATGGAGAAGGGACTGGCCACTGT GAAGAGCGAGATGCAGGACGTGGAAGGAGAGCTGGCGAGGAAGGAGCGGGAGTTCGACGC GGACATGGCCGCGGTGCAGACGGTAATTACAGAAGCCCAAACGGTTGATAACAGAGCCAA GAATGCTGGAGTTACGATCCAAGACACTCTCAACACGTTGGACGGCATCCTACACCTAAT AGACCAGCCTGGCAGTGTGGATGAAGAAGGGCTGATCTTACTCGAGCAGAAGCTCTTCCG CGCCAAGACCCAGATCAACAGCCAGCTGCGGCCGTTGATGTCAGAGCTGGAAGAGAGGGC GCTTCGGCAGAGGGGCCAGCTCCGCTCGCTGGAGATGAGCATAGACGGGATTCTGGCGGA TGTGAAGAACCTGGAGCACATTAGGGACAACCTGCCCCCAGGCTGCTACAATACGCAGGC TCTTGAGCAACACTGAGGCCGCCTTCGAAATTTCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 178-291, + strand, RNAz p=0.806863 | |
| 178-333, + strand, RNAz p=0.939518 | |
| 898-1016, - strand, RNAz p=0.834763 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 178-291, + strand, RNAz p=0.806863 | |
| 178-333, + strand, RNAz p=0.939518 | |
| 898-1016, - strand, RNAz p=0.834763 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 178-333, gnl|bosTau2|chr16 (45175820-45175977) | |
| 178-333, gnl|canFam2|chr7 (19576428-19576570) | |
| 178-333, gnl|echTel1|scaffold_310225 (64869-65010) | |
| 178-333, gnl|galGal2|chr8 (7541426-7541563) | |
| 178-333, gnl|hg17|chr1 (179938118-179938263) | |
| 178-333, gnl|Hg17|chr1 (179938141-179938301) | |
| 178-333, gnl|loxAfr1|scaffold_6284 (37271-37129) | |
| 178-333, gnl|mm7|chr1 (153091897-153091755) | |
| 178-333, gnl|Mm7|chr1 (153091872-153091715) | |
| 178-333, gnl|monDom2|scaffold_16 (37125346-37125488) | |
| 178-333, gnl|panTro1|chr1 (162500566-162500711) | |
| 178-333, gnl|rheMac2|chr1 (187434571-187434426) | |
| 178-333, gnl|rn3|chr13 (68173920-68173778) | |
| 442-657, gnl|bosTau2|chr16 (45178120-45178335) | |
| 442-657, gnl|canFam2|chr7 (19578466-19578623) | |
| 442-657, gnl|danRer3|chr19 (20884526-20884360) | |
| 442-657, gnl|dasNov1|scaffold_5986 (48092-47935) | |
| 442-657, gnl|echTel1|scaffold_130365 (610-760) | |
| 442-657, gnl|fr1|chrUn (278896644-278896487) | |
| 442-657, gnl|galGal2|chr8 (7542440-7542597) | |
| 442-657, gnl|hg17|chr1 (179940135-179940292) | |
| 442-657, gnl|Hg17|chr1 (179940154-179940369) | |
| 442-657, gnl|loxAfr1|scaffold_6284 (35142-34990) | |
| 442-657, gnl|mm7|chr1 (153090266-153090092) | |
| 442-657, gnl|Mm7|chr1 (153090228-153090008) | |
| 442-657, gnl|monDom2|scaffold_16 (37128883-37129036) | |
| 442-657, gnl|oryCun1|scaffold_135878 (13567-13705) | |
| 442-657, gnl|panTro1|chr1 (162502582-162502739) | |
| 442-657, gnl|rheMac2|chr1 (187432560-187432403) | |
| 442-657, gnl|rn3|chr13 (68172200-68172040) | |
| 442-657, gnl|tetNig1|chr15_random (60970-60813) | |
| 898-1174, gnl|bosTau2|chr16 (45183535-45183811) | |
| 898-1174, gnl|canFam2|chr7 (19583517-19583745) | |
| 898-1174, gnl|danRer3|chr2 (28873853-28874074) | |
| 898-1174, gnl|dasNov1|scaffold_12505 (48345-48117) | |
| 898-1174, gnl|echTel1|scaffold_307790 (9149-9377) | |
| 898-1174, gnl|galGal2|chr8 (7543527-7543760) | |
| 898-1174, gnl|hg17|chr1 (179943928-179944156) | |
| 898-1174, gnl|Hg17|chr1 (179943934-179944210) | |
| 898-1174, gnl|loxAfr1|scaffold_80429 (1975-2197) | |
| 898-1174, gnl|mm7|chr1 (153085366-153085138) | |
| 898-1174, gnl|Mm7|chr1 (153085357-153085082) | |
| 898-1174, gnl|monDom2|scaffold_16 (37134106-37134334) | |
| 898-1174, gnl|oryCun1|scaffold_62406 (450-222) | |
| 898-1174, gnl|panTro1|chr1 (162506379-162506607) | |
| 898-1174, gnl|rheMac2|chr1 (187428774-187428546) | |
| 898-1174, gnl|rn3|chr13 (68166697-68166469) | |
| 898-1174, gnl|tetNig1|chrUn_random (91872331-91872554) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-333, gnl|bosTau2|chr16 (45175820-45175977) | |
| 178-333, gnl|canFam2|chr7 (19576428-19576570) | |
| 178-333, gnl|echTel1|scaffold_310225 (64869-65010) | |
| 178-333, gnl|galGal2|chr8 (7541426-7541563) | |
| 178-333, gnl|hg17|chr1 (179938118-179938263) | |
| 178-333, gnl|Hg17|chr1 (179938141-179938301) | |
| 178-333, gnl|loxAfr1|scaffold_6284 (37271-37129) | |
| 178-333, gnl|mm7|chr1 (153091897-153091755) | |
| 178-333, gnl|Mm7|chr1 (153091872-153091715) | |
| 178-333, gnl|monDom2|scaffold_16 (37125346-37125488) | |
| 178-333, gnl|panTro1|chr1 (162500566-162500711) | |
| 178-333, gnl|rheMac2|chr1 (187434571-187434426) | |
| 178-333, gnl|rn3|chr13 (68173920-68173778) | |
| 442-657, gnl|bosTau2|chr16 (45178120-45178335) | |
| 442-657, gnl|canFam2|chr7 (19578466-19578623) | |
| 442-657, gnl|danRer3|chr19 (20884526-20884360) | |
| 442-657, gnl|dasNov1|scaffold_5986 (48092-47935) | |
| 442-657, gnl|echTel1|scaffold_130365 (610-760) | |
| 442-657, gnl|fr1|chrUn (278896644-278896487) | |
| 442-657, gnl|galGal2|chr8 (7542440-7542597) | |
| 442-657, gnl|hg17|chr1 (179940135-179940292) | |
| 442-657, gnl|Hg17|chr1 (179940154-179940369) | |
| 442-657, gnl|loxAfr1|scaffold_6284 (35142-34990) | |
| 442-657, gnl|mm7|chr1 (153090266-153090092) | |
| 442-657, gnl|Mm7|chr1 (153090228-153090008) | |
| 442-657, gnl|monDom2|scaffold_16 (37128883-37129036) | |
| 442-657, gnl|oryCun1|scaffold_135878 (13567-13705) | |
| 442-657, gnl|panTro1|chr1 (162502582-162502739) | |
| 442-657, gnl|rheMac2|chr1 (187432560-187432403) | |
| 442-657, gnl|rn3|chr13 (68172200-68172040) | |
| 442-657, gnl|tetNig1|chr15_random (60970-60813) | |
| 898-1174, gnl|bosTau2|chr16 (45183535-45183811) | |
| 898-1174, gnl|canFam2|chr7 (19583517-19583745) | |
| 898-1174, gnl|danRer3|chr2 (28873853-28874074) | |
| 898-1174, gnl|dasNov1|scaffold_12505 (48345-48117) | |
| 898-1174, gnl|echTel1|scaffold_307790 (9149-9377) | |
| 898-1174, gnl|galGal2|chr8 (7543527-7543760) | |
| 898-1174, gnl|hg17|chr1 (179943928-179944156) | |
| 898-1174, gnl|Hg17|chr1 (179943934-179944210) | |
| 898-1174, gnl|loxAfr1|scaffold_80429 (1975-2197) | |
| 898-1174, gnl|mm7|chr1 (153085366-153085138) | |
| 898-1174, gnl|Mm7|chr1 (153085357-153085082) | |
| 898-1174, gnl|monDom2|scaffold_16 (37134106-37134334) | |
| 898-1174, gnl|oryCun1|scaffold_62406 (450-222) | |
| 898-1174, gnl|panTro1|chr1 (162506379-162506607) | |
| 898-1174, gnl|rheMac2|chr1 (187428774-187428546) | |
| 898-1174, gnl|rn3|chr13 (68166697-68166469) | |
| 898-1174, gnl|tetNig1|chrUn_random (91872331-91872554) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ill (0.175593) | |
| nco (0.161734) | |
| cst (0.140036) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| nco (0.161734) | |
| cst (0.140036) | |
| jej (0.0989218) |