Non-Coding RNA Search

Ss1.1-rjej03b_h23.5

Sequence:


               
               TACGTCATCCACGGACGACTGAACGTGCAGTTCAACACGGGGGAGCACGGCTTTGACAAC
GGGGCCATGGACATGAAGACCATCTTCCGGGCCGTGGGCCCCAGCTTCAGGAGGGGCCTG
GAGGTGGAGCCCTTCGAGAGCGTCCACGTGTACGAGCTCATGTGCCGGCTGCTGGGCATC
GTGCCCGAGGCCAACGACGGGCTCCTCAGCACGCTGCTGCCCACGCTCCAGGAGGCCGAC
GACGGGCTCCTCAGCACCCTGCCGCCCACGCTCAGCTCCGAGGCCAGTAGCAGGTTGCAT
AGCACCTCACTGGCCACGACCCCGTCAGGGTCTGCTCTCCTGCCAAGTGGCCGACCCCCC
TTGGTGACAGGACTGCTGGTGGCTGCAGTTCTTCTGGCCAGGGTCTCATAACACCCACTG
CTCAAGGCCCACCTCTTCCAGGAAGCTTCCAGAAGCTGCTTACAGAGCCTGCGCCTGATC
CTGCTGTGACACAGATGACTGGACATGGATGGGCCTGTCTGCTCAGCTGACTGAGGACAC
CAGCACACCTGTGTCCCCAGGTGTGGGACAGCTCACACCTGGCCATGGTGGTACTGGCAA
TACACCCCCTGCCCAGGTTTAGGTCTCCAGACGGGCAGGCCGGCTCACCAGTCCACTGCA
CCCCCAGACCCACGGAGTGCCCCATGCCTTCCCCCTCCGCCCTTCCTCTCATTGCTGAGC
TGCCCCATGGGGGTGCAGCCCTTTGGGACTACAGGGGGTGCTTGGGAGCCTGCAAGTGAA
GGTGCAGTGGGCCTGCTGGTCTCCCTGCTCAGGCAGAACCCTCAGATCCTGGGACCCCAA
CCTCCAGCTCAGGCGGGCGGTGAGGCCCTGCCCTGGAGCTCCCAGCCAAGAGTCTGCACA
GCTCCGGCCCAGGGGGCACTGTCTCCATCTGGGCTGAGCAGCTCCTGCACATGGGCCACT
AGGAGGGCACAGCCCGGCAGAATGCATGGAGAGGAGTAAAAGGCAGGAATGGTCACCACC
GAGTCCCAGTGCCATCGTGGGGGCACCCTTTTATTCTAAAGCCTGTTGGTTTTGTATAGC
CTTCCGCCTTGACCCCAGTGTACAATAAACTAATTTTGAGGAGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGTCATCCACGGACGACTGAACGTGCAGTTCAACACGGGGGAGCACGGCTTTGACAAC
GGGGCCATGGACATGAAGACCATCTTCCGGGCCGTGGGCCCCAGCTTCAGGAGGGGCCTG
GAGGTGGAGCCCTTCGAGAGCGTCCACGTGTACGAGCTCATGTGCCGGCTGCTGGGCATC
GTGCCCGAGGCCAACGACGGGCTCCTCAGCACGCTGCTGCCCACGCTCCAGGAGGCCGAC
GACGGGCTCCTCAGCACCCTGCCGCCCACGCTCAGCTCCGAGGCCAGTAGCAGGTTGCAT
AGCACCTCACTGGCCACGACCCCGTCAGGGTCTGCTCTCCTGCCAAGTGGCCGACCCCCC
TTGGTGACAGGACTGCTGGTGGCTGCAGTTCTTCTGGCCAGGGTCTCATAACACCCACTG
CTCAAGGCCCACCTCTTCCAGGAAGCTTCCAGAAGCTGCTTACAGAGCCTGCGCCTGATC
CTGCTGTGACACAGATGACTGGACATGGATGGGCCTGTCTGCTCAGCTGACTGAGGACAC
CAGCACACCTGTGTCCCCAGGTGTGGGACAGCTCACACCTGGCCATGGTGGTACTGGCAA
TACACCCCCTGCCCAGGTTTAGGTCTCCAGACGGGCAGGCCGGCTCACCAGTCCACTGCA
CCCCCAGACCCACGGAGTGCCCCATGCCTTCCCCCTCCGCCCTTCCTCTCATTGCTGAGC
TGCCCCATGGGGGTGCAGCCCTTTGGGACTACAGGGGGTGCTTGGGAGCCTGCAAGTGAA
GGTGCAGTGGGCCTGCTGGTCTCCCTGCTCAGGCAGAACCCTCAGATCCTGGGACCCCAA
CCTCCAGCTCAGGCGGGCGGTGAGGCCCTGCCCTGGAGCTCCCAGCCAAGAGTCTGCACA
GCTCCGGCCCAGGGGGCACTGTCTCCATCTGGGCTGAGCAGCTCCTGCACATGGGCCACT
AGGAGGGCACAGCCCGGCAGAATGCATGGAGAGGAGTAAAAGGCAGGAATGGTCACCACC
GAGTCCCAGTGCCATCGTGGGGGCACCCTTTTATTCTAAAGCCTGTTGGTTTTGTATAGC
CTTCCGCCTTGACCCCAGTGTACAATAAACTAATTTTGAGGAGGCTCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               585-713, - strand, RNAz p=0.646978
               

               
               595-713, - strand, RNAz p=0.729539

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               585-713, - strand, RNAz p=0.646978
               

               
               595-713, - strand, RNAz p=0.729539

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               17-254, gnl|bosTau2|chr19 (46887588-46887824)
               

               
               17-254, gnl|Hg17|chr17 (75325436-75325690)
               

               
               17-254, gnl|Mm7|chr11 (119101165-119101379)
               


               
               422-713, gnl|bosTau2|chr19 (46888858-46889145)
               

               
               422-713, gnl|canFam2|chr9 (4880365-4880061)
               

               
               422-713, gnl|hg17|chr17 (75330084-75330521)
               

               
               422-713, gnl|Hg17|chr17 (75330174-75330437)
               

               
               422-713, gnl|mm7|chr11 (119104432-119104829)
               

               
               422-713, gnl|Mm7|chr11 (119104527-119104776)
               

               
               422-713, gnl|panTro1|chr19 (79016678-79017115)
               

               
               422-713, gnl|rheMac2|chr16 (75177503-75177927)
               

               
               422-713, gnl|rn3|chrUn (51814821-51815207)
               


               
               954-1126, gnl|bosTau2|chr19 (46889556-46889733)
               

               
               954-1126, gnl|Hg17|chr17 (75330562-75330707)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-254, gnl|bosTau2|chr19 (46887588-46887824)
               

               
               17-254, gnl|Hg17|chr17 (75325436-75325690)
               

               
               17-254, gnl|Mm7|chr11 (119101165-119101379)
               


               
               422-713, gnl|bosTau2|chr19 (46888858-46889145)
               

               
               422-713, gnl|canFam2|chr9 (4880365-4880061)
               

               
               422-713, gnl|hg17|chr17 (75330084-75330521)
               

               
               422-713, gnl|Hg17|chr17 (75330174-75330437)
               

               
               422-713, gnl|mm7|chr11 (119104432-119104829)
               

               
               422-713, gnl|Mm7|chr11 (119104527-119104776)
               

               
               422-713, gnl|panTro1|chr19 (79016678-79017115)
               

               
               422-713, gnl|rheMac2|chr16 (75177503-75177927)
               

               
               422-713, gnl|rn3|chrUn (51814821-51815207)
               


               
               954-1126, gnl|bosTau2|chr19 (46889556-46889733)
               

               
               954-1126, gnl|Hg17|chr17 (75330562-75330707)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               jej (0.989218)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.989218)
               

               
               nje (0.16592)

	585-713, - strand, RNAz p=0.646978
	595-713, - strand, RNAz p=0.729539

	17-254, gnl\|bosTau2\|chr19 (46887588-46887824)
	17-254, gnl\|Hg17\|chr17 (75325436-75325690)
	17-254, gnl\|Mm7\|chr11 (119101165-119101379)

	422-713, gnl\|bosTau2\|chr19 (46888858-46889145)
	422-713, gnl\|canFam2\|chr9 (4880365-4880061)
	422-713, gnl\|hg17\|chr17 (75330084-75330521)
	422-713, gnl\|Hg17\|chr17 (75330174-75330437)
	422-713, gnl\|mm7\|chr11 (119104432-119104829)
	422-713, gnl\|Mm7\|chr11 (119104527-119104776)
	422-713, gnl\|panTro1\|chr19 (79016678-79017115)
	422-713, gnl\|rheMac2\|chr16 (75177503-75177927)
	422-713, gnl\|rn3\|chrUn (51814821-51815207)

	954-1126, gnl\|bosTau2\|chr19 (46889556-46889733)
	954-1126, gnl\|Hg17\|chr17 (75330562-75330707)