Non-Coding RNA Search

Ss1.1-rjej03b_j5.5

Sequence:


               
               CCACCCAGCCACTGTGACCTATTTTCCCCAACCTTGCCCGGGATTTTCTCTTAGCTCCTT
GGTTCAAGTGCAGTTCTAGCCACCCAGTGGCTTAGGGAATATGCATGTGACAGGAGAAAT
AAAGTCTGAACTACTGGTAGATGAGGCCTTTCAGGGAGTAGTGGGAAGTTTTTCCACTTG
ATGCCTTTTTAGCACTAATTCTGTAGAGAAACCCTGGTGAATTCTTCACATCTCAGCAGG
CCAGAGCCTCCACGGGATCTTTACCTCAAAGATATAAACTCAAATAAAAAAAAAAGTTTA
AACTCAGTTTGACAGGTGAGGGGGAAGGTGACCCTGCTAACTAGAGCACCTATCTCATGA
AAGCACACATGAGATGAAAGTGGGTACAACTGAGCTCATGCTTTCCAGCCTCATGAAACA
CATCCAAAGGCGGACAGTTTTCCAGGGACAATAACATGACTGCACATAGAAAGGGCAGCC
TATTAGGTGGAAGGAAGGGACAGGTTTACTCTGAAAGCGTAGGATTTCTCCCAGAGTCTA
AGGTGTTCACTTAGTCTTAGGGGACAGGTGGGGGACACGGATGAGAAACAGCAGGAGTGG
GGCCTGTGTCTGTCCCTGTGGGGGCAGAGGATCTGCACCAGTCCAACCAAGGAATATCTG
GATCTTCCCGGAACTCCAAGGAATCCAGGCCTGGACAACCAGCCCTCAGCTGCACAGTAC
TATAGACTCATTCGTTTACTCTGCTGGTGAACAGACTGTCAGCCAGCCAATCAAACTCCC
TTATTCAGGGGGCCTAGTAAACAGCTAGTTTGGGACACCTGGGATGGAATTTTAATAACT
CAATAAATGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCCAGCCACTGTGACCTATTTTCCCCAACCTTGCCCGGGATTTTCTCTTAGCTCCTT
GGTTCAAGTGCAGTTCTAGCCACCCAGTGGCTTAGGGAATATGCATGTGACAGGAGAAAT
AAAGTCTGAACTACTGGTAGATGAGGCCTTTCAGGGAGTAGTGGGAAGTTTTTCCACTTG
ATGCCTTTTTAGCACTAATTCTGTAGAGAAACCCTGGTGAATTCTTCACATCTCAGCAGG
CCAGAGCCTCCACGGGATCTTTACCTCAAAGATATAAACTCAAATAAAAAAAAAAGTTTA
AACTCAGTTTGACAGGTGAGGGGGAAGGTGACCCTGCTAACTAGAGCACCTATCTCATGA
AAGCACACATGAGATGAAAGTGGGTACAACTGAGCTCATGCTTTCCAGCCTCATGAAACA
CATCCAAAGGCGGACAGTTTTCCAGGGACAATAACATGACTGCACATAGAAAGGGCAGCC
TATTAGGTGGAAGGAAGGGACAGGTTTACTCTGAAAGCGTAGGATTTCTCCCAGAGTCTA
AGGTGTTCACTTAGTCTTAGGGGACAGGTGGGGGACACGGATGAGAAACAGCAGGAGTGG
GGCCTGTGTCTGTCCCTGTGGGGGCAGAGGATCTGCACCAGTCCAACCAAGGAATATCTG
GATCTTCCCGGAACTCCAAGGAATCCAGGCCTGGACAACCAGCCCTCAGCTGCACAGTAC
TATAGACTCATTCGTTTACTCTGCTGGTGAACAGACTGTCAGCCAGCCAATCAAACTCCC
TTATTCAGGGGGCCTAGTAAACAGCTAGTTTGGGACACCTGGGATGGAATTTTAATAACT
CAATAAATGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               728-847, - strand, RNAz p=0.631806

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               728-847, - strand, RNAz p=0.631806

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-850, gnl|bosTau2|chr25 (32378698-32379534)
               

               
               3-850, gnl|Hg17|chr7 (99831816-99830690)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-850, gnl|bosTau2|chr25 (32378698-32379534)
               

               
               3-850, gnl|Hg17|chr7 (99831816-99830690)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               jej (0.0989218)

	3-850, gnl\|bosTau2\|chr25 (32378698-32379534)
	3-850, gnl\|Hg17\|chr7 (99831816-99830690)