Non-Coding RNA Search

Ss1.1-rjej03b_l8.5

Sequence:


               
               AACCCCGTCCATTTCTCCGTCAGTCTGCAAGGACGTTGTTGTGGAGCTGTCAAGGAGAAA
AATTACCATGGCTACTAGTTCTTTGACCAAACCTCAGATGCGTGGCCTTCTGGCCAAGCG
TCTGCGATTTCATATTGTTGGAGCATTCATTGTCTCATTGGGGGTTGCAACTTTCTATAA
GTTTGCTGTGGCTGAACCAAGAAAGAAGGCATACGCAGATTTCTACAGAAATTATGATTC
CATGAAAGATTTTGAGGAGATGAGGAAGGCTGGTATCTTTCAGAGTGCGAAGTGATTTTG
GAATGTAAAGAATTTCTTTGGGTTGAGTTCCATGGAAGTTTGTCACTTAACCATTTTCCT
GAACTGTGAAACTATGAGCTCCAAGTATCTGGGCTAAGAAGTAGTTTCTCTTGATAAATA
AACAGTTAACAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCCGTCCATTTCTCCGTCAGTCTGCAAGGACGTTGTTGTGGAGCTGTCAAGGAGAAA
AATTACCATGGCTACTAGTTCTTTGACCAAACCTCAGATGCGTGGCCTTCTGGCCAAGCG
TCTGCGATTTCATATTGTTGGAGCATTCATTGTCTCATTGGGGGTTGCAACTTTCTATAA
GTTTGCTGTGGCTGAACCAAGAAAGAAGGCATACGCAGATTTCTACAGAAATTATGATTC
CATGAAAGATTTTGAGGAGATGAGGAAGGCTGGTATCTTTCAGAGTGCGAAGTGATTTTG
GAATGTAAAGAATTTCTTTGGGTTGAGTTCCATGGAAGTTTGTCACTTAACCATTTTCCT
GAACTGTGAAACTATGAGCTCCAAGTATCTGGGCTAAGAAGTAGTTTCTCTTGATAAATA
AACAGTTAACAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33285263|gb|AAP43949.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33285263|gb|AAP43949.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               44-320, + strand, RNAz p=0.806529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-320, + strand, RNAz p=0.806529

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-461, gnl|bosTau2|chr13 (10876933-10877367)
               

               
               7-461, gnl|Hg17|chr4 (76866100-76865681)
               

               
               7-461, gnl|Mm7|chr12 (54304231-54303806)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-461, gnl|bosTau2|chr13 (10876933-10877367)
               

               
               7-461, gnl|Hg17|chr4 (76866100-76865681)
               

               
               7-461, gnl|Mm7|chr12 (54304231-54303806)

Expressed library(ies): 69 entry(ies)

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Expressed library(ies): 69 entry(ies)

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               cbe (8.13397)
               

               
               rec (4.6729)
               

               
               fhi (2.37409)
               

               
               fco (2.35812)
               

               
               sag (2.19258)
               

               
               bfe (2.09801)
               

               
               aor (1.75747)
               

               
               cte (1.75644)
               

               
               duo (1.72801)
               

               
               kid (1.42709)
               

               
               csk (1.40746)
               

               
               nms (1.06929)
               

               
               spc (1.02029)
               

               
               hlv (0.974795)
               

               
               nco (0.970403)
               

               
               cmu (0.931966)
               

               
               nep (0.919625)
               

               
               eje (0.889504)
               

               
               ill (0.877963)
               

               
               lnt (0.853849)
               

               
               ebs (0.828108)
               

               
               jca (0.797721)
               

               
               col (0.780031)
               

               
               nlu (0.766724)
               

               
               pty (0.713572)
               

               
               ton (0.702001)
               

               
               fbs (0.701385)
               

               
               jej (0.692452)
               

               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               cut (0.679694)
               

               
               nje (0.66368)
               

               
               mas (0.630915)
               

               
               sme (0.610874)
               

               
               fcc (0.593354)
               

               
               nmm (0.531209)
               

               
               mcp (0.511945)
               

               
               ese (0.506009)
               

               
               eru (0.480192)
               

               
               med (0.465008)
               

               
               ecc (0.46014)
               

               
               isp (0.451128)
               

               
               hyp (0.42851)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               mgm (0.180343)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

Expressed library(ies): 69 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (8.13397)
               

               
               rec (4.6729)
               

               
               fhi (2.37409)
               

               
               fco (2.35812)
               

               
               sag (2.19258)
               

               
               bfe (2.09801)
               

               
               aor (1.75747)
               

               
               cte (1.75644)
               

               
               duo (1.72801)
               

               
               kid (1.42709)
               

               
               csk (1.40746)
               

               
               nms (1.06929)
               

               
               spc (1.02029)
               

               
               hlv (0.974795)
               

               
               nco (0.970403)
               

               
               cmu (0.931966)
               

               
               nep (0.919625)
               

               
               eje (0.889504)
               

               
               ill (0.877963)
               

               
               lnt (0.853849)
               

               
               ebs (0.828108)
               

               
               jca (0.797721)
               

               
               col (0.780031)
               

               
               nlu (0.766724)
               

               
               pty (0.713572)
               

               
               ton (0.702001)
               

               
               fbs (0.701385)
               

               
               jej (0.692452)
               

               
               ece (0.687916)
               

               
               nca (0.684369)
               

               
               cut (0.679694)
               

               
               nje (0.66368)
               

               
               mas (0.630915)
               

               
               sme (0.610874)
               

               
               fcc (0.593354)
               

               
               nmm (0.531209)
               

               
               mcp (0.511945)
               

               
               ese (0.506009)
               

               
               eru (0.480192)
               

               
               med (0.465008)
               

               
               ecc (0.46014)
               

               
               isp (0.451128)
               

               
               hyp (0.42851)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               elu (0.385356)
               

               
               sto (0.359648)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               mgm (0.180343)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ldo (0.0970026)

	7-461, gnl\|bosTau2\|chr13 (10876933-10877367)
	7-461, gnl\|Hg17\|chr4 (76866100-76865681)
	7-461, gnl\|Mm7\|chr12 (54304231-54303806)

	cbe (8.13397)
	rec (4.6729)
	fhi (2.37409)
	fco (2.35812)
	sag (2.19258)
	bfe (2.09801)
	aor (1.75747)
	cte (1.75644)
	duo (1.72801)
	kid (1.42709)
	csk (1.40746)
	nms (1.06929)
	spc (1.02029)
	hlv (0.974795)
	nco (0.970403)
	cmu (0.931966)
	nep (0.919625)
	eje (0.889504)
	ill (0.877963)
	lnt (0.853849)
	ebs (0.828108)
	jca (0.797721)
	col (0.780031)
	nlu (0.766724)
	pty (0.713572)
	ton (0.702001)
	fbs (0.701385)
	jej (0.692452)
	ece (0.687916)
	nca (0.684369)
	cut (0.679694)
	nje (0.66368)
	mas (0.630915)
	sme (0.610874)
	fcc (0.593354)
	nmm (0.531209)
	mcp (0.511945)
	ese (0.506009)
	eru (0.480192)
	med (0.465008)
	ecc (0.46014)
	isp (0.451128)
	hyp (0.42851)
	tes (0.415628)
	lyg (0.399308)
	elu (0.385356)
	sto (0.359648)
	lin (0.291206)
	spl (0.286369)
	che (0.272628)
	fce (0.271592)
	ssp (0.271039)
	thg (0.253582)
	pgl (0.236967)
	mgp (0.230681)
	hea (0.204499)
	fli (0.202881)
	nbm (0.198649)
	mgm (0.180343)
	cje (0.165235)
	csp (0.161186)
	mga (0.160205)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	eep (0.122564)
	ldo (0.0970026)