Non-Coding RNA Search

Ss1.1-rjej03b_m20.5

Sequence:


               
               GGAAAGACCTATCGCCATAGCTCCCATCTCATTCAACACCAGAGACTCCACAGTGGGGAG
AAACCATATAAATGTAGTGAATGTGGGAAAGCTTTCAATGAGAGTTCCAAACTCTTTGAC
CATCAGAGAATCCATACTGGGGAGAAACCTTATGGATGCAGTGAGTGTGGAGCAGTCTTT
AGTCGGAGTAAAAGCCTTGTCCGCCATCAGGTCCTTCACACTGGAGAGAAACCTTACAAG
TGCAATGAGTGTGGGAAAGCTTTCTGTTCCAACAGAAATCTTATTGACCATCAGAGGATC
CACACTGGGGAGAAACCTTATGAGTGTAATGAATGTGGCAAGGCCTTCAGTCGGAGTAAA
TGTCTTAATCGACATCAGAGCCTCCACACTGGGGAAAAACCATACAAATGCAGTGAGTGT
GGGAAAGCCTTCAATCAGATCTCTCAACTTGCTGAACATGAGCGAATTCATACTGGAGAG
AAACCTTTTGAATGTAATGAGTGTGGCAAGGCATTCAGTCTGAGTAAATGTCTCATTCGA
CACCAGAGACTTCACACAGGTGAAAAGCCCTATAAATGCAAAGAGTGTGGAAAGTCCTTC
AATCAAAACTCATACCTCATTATTCACCAGAGAATTCACACTGGTGAGAAACCTTATGGA
TGTATTGAATGTGGGAAGGTCTTCAGTCATAATTCTAGCCTTATGGTACATCAGAGAACC
CATACTGGAGAGAAACCCTATAAATGCAAAGATTGTGGAAAAGCTTTTCGTGACAGCTCA
CAACTAACTGTGCACCAGAGAGTTCACACTGGAGAGAAACCCTATGAGTGTATTGAGTGT
GGGAAGGCCTTCAGTCAGCGTTCCACTTTCAATCACCACCAGCGAACTCACACTGGAGAG
AAGCACTCAGGGCTGGCTCGGTCCATTTCTTAGGGCATAATTCTCCCAGACAAAGAGTAA
GGAACTTTGAGTTAAGGTTTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGACCTATCGCCATAGCTCCCATCTCATTCAACACCAGAGACTCCACAGTGGGGAG
AAACCATATAAATGTAGTGAATGTGGGAAAGCTTTCAATGAGAGTTCCAAACTCTTTGAC
CATCAGAGAATCCATACTGGGGAGAAACCTTATGGATGCAGTGAGTGTGGAGCAGTCTTT
AGTCGGAGTAAAAGCCTTGTCCGCCATCAGGTCCTTCACACTGGAGAGAAACCTTACAAG
TGCAATGAGTGTGGGAAAGCTTTCTGTTCCAACAGAAATCTTATTGACCATCAGAGGATC
CACACTGGGGAGAAACCTTATGAGTGTAATGAATGTGGCAAGGCCTTCAGTCGGAGTAAA
TGTCTTAATCGACATCAGAGCCTCCACACTGGGGAAAAACCATACAAATGCAGTGAGTGT
GGGAAAGCCTTCAATCAGATCTCTCAACTTGCTGAACATGAGCGAATTCATACTGGAGAG
AAACCTTTTGAATGTAATGAGTGTGGCAAGGCATTCAGTCTGAGTAAATGTCTCATTCGA
CACCAGAGACTTCACACAGGTGAAAAGCCCTATAAATGCAAAGAGTGTGGAAAGTCCTTC
AATCAAAACTCATACCTCATTATTCACCAGAGAATTCACACTGGTGAGAAACCTTATGGA
TGTATTGAATGTGGGAAGGTCTTCAGTCATAATTCTAGCCTTATGGTACATCAGAGAACC
CATACTGGAGAGAAACCCTATAAATGCAAAGATTGTGGAAAAGCTTTTCGTGACAGCTCA
CAACTAACTGTGCACCAGAGAGTTCACACTGGAGAGAAACCCTATGAGTGTATTGAGTGT
GGGAAGGCCTTCAGTCAGCGTTCCACTTTCAATCACCACCAGCGAACTCACACTGGAGAG
AAGCACTCAGGGCTGGCTCGGTCCATTTCTTAGGGCATAATTCTCCCAGACAAAGAGTAA
GGAACTTTGAGTTAAGGTTTCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61887903|ref|XP_601433.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887903|ref|XP_601433.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-440, - strand, RNAz p=0.921432

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-440, - strand, RNAz p=0.921432

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-921, gnl|bosTau2|chr17 (41441094-41440175)
               


               
               3-912, gnl|bosTau2|chr10 (8996901-8995994)
               

               
               3-912, gnl|Hg17|chr19 (42818687-42817755)
               

               
               3-912, gnl|Mm7|chr2 (127310328-127309509)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-921, gnl|bosTau2|chr17 (41441094-41440175)
               


               
               3-912, gnl|bosTau2|chr10 (8996901-8995994)
               

               
               3-912, gnl|Hg17|chr19 (42818687-42817755)
               

               
               3-912, gnl|Mm7|chr2 (127310328-127309509)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ecc (0.23007)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               jej (0.0989218)

	1-921, gnl\|bosTau2\|chr17 (41441094-41440175)

	3-912, gnl\|bosTau2\|chr10 (8996901-8995994)
	3-912, gnl\|Hg17\|chr19 (42818687-42817755)
	3-912, gnl\|Mm7\|chr2 (127310328-127309509)

	ecc (0.23007)
	lun (0.150489)
	pty (0.142714)
	lnt (0.142308)
	jej (0.0989218)