Non-Coding RNA Search

Ss1.1-rjej03b_m21.5

Sequence:


               
               TGCAGGCCAGGTCTGAGCTGCAGGCCCCTCCCAGCTCCTTGGGCTCCTCAGGCTACCACC
CAGCCAGAAGGGACCCCCTGGTCCAGCTTCGGGCCCCGTGCCCCCCAGGCCACGGGCTGT
GCCCACCGCCGGACCTGCCGTAGTGACCCTGGGGCGCCAACTCTCCCGTGACTCCAGAGT
CCGCCTGGCGGCGGTGGCAGCAGCTGCCCCTCTGACCCTGGGGGGTGCAGGCAGGGCTGT
GGCAGGTGCTGCCGCCAGGGCGTGCCCTCCCTCCCTGTGCGGGTCTCTGCCGCCCCGCAG
GTGCAGGCTGCTGGAACCACGTTTCCTTGGGGAGTGTGACGTCTTTAGGAGGTGAGGTGG
CGCCTCCCCGAGGTGCACCTGGCAGGAGGCGGGTCCGGGCGGGCTCTCCAGGTGCTCAGA
TCAAGGCCTCCCTGGGACGAGCGTTCCGTCCAGGAGGCCTCTGCCCGGCGCCTGCACCGC
CAGGAGCAGCCGCGTCTCCCCGCGGGCTGCAGGGCCTGGCCCTGGGCCGAGCACTGGCCA
GTAGCCGCCCGGTGCTGCCAGGTGGGTCACGGCTGTGTGCATGCACCCGCGTGTGAGCGT
GTGCGTGGCCTTGTGCCCCTCCCCCCTCTGCGTGGCCCACCTTCTGCCCTAGGATTTAAG
ATGCAGCCACGTGTTGCACATGTGGGGGGAAGGCCTGGCTGTATATCAGTGTAAACTTGG
AGGAGAGATTTTTCTATCATGTAGAGTAGGTATTTTTTATAGATTGAAGGTTGATCAATT
TTTTAATACTTCCGAGAGAGAAAACTATCTGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGCCAGGTCTGAGCTGCAGGCCCCTCCCAGCTCCTTGGGCTCCTCAGGCTACCACC
CAGCCAGAAGGGACCCCCTGGTCCAGCTTCGGGCCCCGTGCCCCCCAGGCCACGGGCTGT
GCCCACCGCCGGACCTGCCGTAGTGACCCTGGGGCGCCAACTCTCCCGTGACTCCAGAGT
CCGCCTGGCGGCGGTGGCAGCAGCTGCCCCTCTGACCCTGGGGGGTGCAGGCAGGGCTGT
GGCAGGTGCTGCCGCCAGGGCGTGCCCTCCCTCCCTGTGCGGGTCTCTGCCGCCCCGCAG
GTGCAGGCTGCTGGAACCACGTTTCCTTGGGGAGTGTGACGTCTTTAGGAGGTGAGGTGG
CGCCTCCCCGAGGTGCACCTGGCAGGAGGCGGGTCCGGGCGGGCTCTCCAGGTGCTCAGA
TCAAGGCCTCCCTGGGACGAGCGTTCCGTCCAGGAGGCCTCTGCCCGGCGCCTGCACCGC
CAGGAGCAGCCGCGTCTCCCCGCGGGCTGCAGGGCCTGGCCCTGGGCCGAGCACTGGCCA
GTAGCCGCCCGGTGCTGCCAGGTGGGTCACGGCTGTGTGCATGCACCCGCGTGTGAGCGT
GTGCGTGGCCTTGTGCCCCTCCCCCCTCTGCGTGGCCCACCTTCTGCCCTAGGATTTAAG
ATGCAGCCACGTGTTGCACATGTGGGGGGAAGGCCTGGCTGTATATCAGTGTAAACTTGG
AGGAGAGATTTTTCTATCATGTAGAGTAGGTATTTTTTATAGATTGAAGGTTGATCAATT
TTTTAATACTTCCGAGAGAGAAAACTATCTGTGTGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               258-814, gnl|bosTau2|chr25 (1349262-1348710)
               

               
               258-814, gnl|Hg17|chr16 (511610-512235)
               

               
               258-814, gnl|Mm7|chr17 (24173259-24172582)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               258-814, gnl|bosTau2|chr25 (1349262-1348710)
               

               
               258-814, gnl|Hg17|chr16 (511610-512235)
               

               
               258-814, gnl|Mm7|chr17 (24173259-24172582)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               fty (0.17584)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fty (0.17584)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	258-814, gnl\|bosTau2\|chr25 (1349262-1348710)
	258-814, gnl\|Hg17\|chr16 (511610-512235)
	258-814, gnl\|Mm7\|chr17 (24173259-24172582)

	fce (0.271592)
	fty (0.17584)
	ebs (0.118301)
	cty (0.10408)
	jej (0.0989218)