Ss1.1-rjej03b_m8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACGTTTGAAGTTCCGCTGAATGATTCAGGATCAGCCGGTCTGGGCGTCAGTGTCAAAG GTAACCGGTCAAAAGAGAACCACGCCGATTGGGGAATCTTGGTCAAGTCCATTATTAACG GAGGAGCAGGGTCTAAGGACGGGAGGCTTCGGGTGGACGATCAGCTGATCGCAGTGAATG GAGAGTCCCTGTGGGGGAAGACAAACCAGGATGCCATGGAAACCCTCCGCAGGTCCATGT CCACGGAGGGGAACAAGCGAGGCATGATCCAGCTCATTGTGGCAAGGAGAATAAGCAAGT GTGCTGAGCTGAAGTCACCTGGGAGCCCCTCTGGACCCGAGCTGCCCATTGAAACGGTGT TGGATGAGCGAGAACGAAGGATTTCCCATTCCCTCTACAGCGGGATTGAGGGCCTTGACG AATCACCCACGAGAAATGCTGCGCTCAGTAGGATAATGGGTAAATACCAGCTGTCCCCCA CGGTGAACATGCCCCAAGATGACACTGTCATCATAGAGGATGACAGATTGCCGGTGCTTC CTCCACACCTCTCTGACCAGTCATCTTCCAGCTCCCATGATGATGTAGGGTTCGTGACCA CAGATCCTAGCACCTGGGCCAAGGCTGCCATCACTGACTCAGCAGACTGCTCTTTGAGTC CGGATGTCGATCCAGTTCTTGCTTTTCAACGAGAAGGATTTGGACGTCAGAGTATGTCAG AAAAACGCACAAAGCAATTTTCAGATGCCAGTCAATTGGATTTCGTTAAAACGCGAAAAT CAAAAAGCATGGATTTAGGTATAGCTGACGAGACTAAACTCAATACAGTGGATGACCAGA AAGCAGGTTCCCCCAGCAGAGATGTGGGGCCTTCCTTGGGTCTGAAGAAGTCGAGCTCTT TAGAGAGTCTGCAGACAGCAGTCGCTGAGGTGACTTTGAATGGGGACATTCCCTTTCATC GCCCACGGCCGCGGATAATCCGAGGAAGAGGATGCAATGAGAGCTTCAGAGCTGCCATTG ACAAGTCCTATGATAAACCTGCCGTAGATGATGATGACGAAGGCATGGAGACATTGGAAG AAGACACAGAAGAAAGTTCAAGATCAGTAAGAGAGTCTGTATCCACAGCCAGCGACCAGC CTTCCCACTCTCTGGAGAGACAGATGAATGGAAACCAAGAGAGAGGTGATAAGACCGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACGTTTGAAGTTCCGCTGAATGATTCAGGATCAGCCGGTCTGGGCGTCAGTGTCAAAG GTAACCGGTCAAAAGAGAACCACGCCGATTGGGGAATCTTGGTCAAGTCCATTATTAACG GAGGAGCAGGGTCTAAGGACGGGAGGCTTCGGGTGGACGATCAGCTGATCGCAGTGAATG GAGAGTCCCTGTGGGGGAAGACAAACCAGGATGCCATGGAAACCCTCCGCAGGTCCATGT CCACGGAGGGGAACAAGCGAGGCATGATCCAGCTCATTGTGGCAAGGAGAATAAGCAAGT GTGCTGAGCTGAAGTCACCTGGGAGCCCCTCTGGACCCGAGCTGCCCATTGAAACGGTGT TGGATGAGCGAGAACGAAGGATTTCCCATTCCCTCTACAGCGGGATTGAGGGCCTTGACG AATCACCCACGAGAAATGCTGCGCTCAGTAGGATAATGGGTAAATACCAGCTGTCCCCCA CGGTGAACATGCCCCAAGATGACACTGTCATCATAGAGGATGACAGATTGCCGGTGCTTC CTCCACACCTCTCTGACCAGTCATCTTCCAGCTCCCATGATGATGTAGGGTTCGTGACCA CAGATCCTAGCACCTGGGCCAAGGCTGCCATCACTGACTCAGCAGACTGCTCTTTGAGTC CGGATGTCGATCCAGTTCTTGCTTTTCAACGAGAAGGATTTGGACGTCAGAGTATGTCAG AAAAACGCACAAAGCAATTTTCAGATGCCAGTCAATTGGATTTCGTTAAAACGCGAAAAT CAAAAAGCATGGATTTAGGTATAGCTGACGAGACTAAACTCAATACAGTGGATGACCAGA AAGCAGGTTCCCCCAGCAGAGATGTGGGGCCTTCCTTGGGTCTGAAGAAGTCGAGCTCTT TAGAGAGTCTGCAGACAGCAGTCGCTGAGGTGACTTTGAATGGGGACATTCCCTTTCATC GCCCACGGCCGCGGATAATCCGAGGAAGAGGATGCAATGAGAGCTTCAGAGCTGCCATTG ACAAGTCCTATGATAAACCTGCCGTAGATGATGATGACGAAGGCATGGAGACATTGGAAG AAGACACAGAAGAAAGTTCAAGATCAGTAAGAGAGTCTGTATCCACAGCCAGCGACCAGC CTTCCCACTCTCTGGAGAGACAGATGAATGGAAACCAAGAGAGAGGTGATAAGACCGATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 955-1193, - strand, RNAz p=0.612904 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 955-1193, - strand, RNAz p=0.612904 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 136-314, gnl|bosTau2|chr12 (29637314-29637492) | |
| 136-314, gnl|canFam2|chr2 (5558654-5558448) | |
| 136-314, gnl|danRer3|chr2 (38379469-38379249) | |
| 136-314, gnl|dasNov1|scaffold_419 (95329-95535) | |
| 136-314, gnl|fr1|chrUn (169479221-169479412) | |
| 136-314, gnl|galGal2|chr2 (12740426-12740233) | |
| 136-314, gnl|hg17|chr10 (34688071-34688277) | |
| 136-314, gnl|Hg17|chr10 (34688253-34688074) | |
| 136-314, gnl|loxAfr1|scaffold_757 (73914-73717) | |
| 136-314, gnl|mm7|chr8 (125997745-125997552) | |
| 136-314, gnl|Mm7|chr8 (125997568-125997745) | |
| 136-314, gnl|monDom2|scaffold_7 (33990627-33990421) | |
| 136-314, gnl|oryCun1|scaffold_206239 (149541-149738) | |
| 136-314, gnl|panTro1|chr8 (35111939-35112145) | |
| 136-314, gnl|rheMac2|chr9 (34543970-34544176) | |
| 136-314, gnl|rn3|chr9 (61000339-61000164) | |
| 136-314, gnl|tetNig1|chr15 (1178080-1177897) | |
| 136-314, gnl|xenTro1|scaffold_137 (1565216-1565014) | |
| 459-649, gnl|bosTau2|chr12 (29651920-29652110) | |
| 459-649, gnl|Hg17|chr10 (34670751-34670561) | |
| 459-649, gnl|Mm7|chr8 (126013616-126013806) | |
| 845-1072, gnl|bosTau2|chr12 (29662099-29662326) | |
| 845-1072, gnl|canFam2|chr2 (5584358-5584104) | |
| 845-1072, gnl|danRer3|chr2 (38402912-38402647) | |
| 845-1072, gnl|dasNov1|scaffold_419 (51359-51613) | |
| 845-1072, gnl|echTel1|scaffold_321749 (250132-249878) | |
| 845-1072, gnl|fr1|chrUn (169445829-169446071) | |
| 845-1072, gnl|galGal2|chr2 (12770876-12770620) | |
| 845-1072, gnl|hg17|chr10 (34660040-34660295) | |
| 845-1072, gnl|Hg17|chr10 (34660280-34660053) | |
| 845-1072, gnl|loxAfr1|scaffold_7600 (14996-15250) | |
| 845-1072, gnl|mm7|chr8 (126024050-126023798) | |
| 845-1072, gnl|Mm7|chr8 (126023810-126024037) | |
| 845-1072, gnl|monDom2|scaffold_7 (34023476-34023228) | |
| 845-1072, gnl|oryCun1|scaffold_206239 (117372-117623) | |
| 845-1072, gnl|panTro1|chr8 (35083856-35084111) | |
| 845-1072, gnl|rheMac2|chr9 (34517400-34517653) | |
| 845-1072, gnl|rn3|chr19 (57399911-57399659) | |
| 845-1072, gnl|tetNig1|chr15 (1184136-1183898) | |
| 845-1072, gnl|xenTro1|scaffold_137 (1598390-1598131) | |
| 1075-1200, gnl|bosTau2|chr12 (29676588-29676713) | |
| 1075-1200, gnl|Hg17|chr10 (34646272-34646147) | |
| 1075-1200, gnl|Mm7|chr8 (126034764-126034889) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 136-314, gnl|bosTau2|chr12 (29637314-29637492) | |
| 136-314, gnl|canFam2|chr2 (5558654-5558448) | |
| 136-314, gnl|danRer3|chr2 (38379469-38379249) | |
| 136-314, gnl|dasNov1|scaffold_419 (95329-95535) | |
| 136-314, gnl|fr1|chrUn (169479221-169479412) | |
| 136-314, gnl|galGal2|chr2 (12740426-12740233) | |
| 136-314, gnl|hg17|chr10 (34688071-34688277) | |
| 136-314, gnl|Hg17|chr10 (34688253-34688074) | |
| 136-314, gnl|loxAfr1|scaffold_757 (73914-73717) | |
| 136-314, gnl|mm7|chr8 (125997745-125997552) | |
| 136-314, gnl|Mm7|chr8 (125997568-125997745) | |
| 136-314, gnl|monDom2|scaffold_7 (33990627-33990421) | |
| 136-314, gnl|oryCun1|scaffold_206239 (149541-149738) | |
| 136-314, gnl|panTro1|chr8 (35111939-35112145) | |
| 136-314, gnl|rheMac2|chr9 (34543970-34544176) | |
| 136-314, gnl|rn3|chr9 (61000339-61000164) | |
| 136-314, gnl|tetNig1|chr15 (1178080-1177897) | |
| 136-314, gnl|xenTro1|scaffold_137 (1565216-1565014) | |
| 459-649, gnl|bosTau2|chr12 (29651920-29652110) | |
| 459-649, gnl|Hg17|chr10 (34670751-34670561) | |
| 459-649, gnl|Mm7|chr8 (126013616-126013806) | |
| 845-1072, gnl|bosTau2|chr12 (29662099-29662326) | |
| 845-1072, gnl|canFam2|chr2 (5584358-5584104) | |
| 845-1072, gnl|danRer3|chr2 (38402912-38402647) | |
| 845-1072, gnl|dasNov1|scaffold_419 (51359-51613) | |
| 845-1072, gnl|echTel1|scaffold_321749 (250132-249878) | |
| 845-1072, gnl|fr1|chrUn (169445829-169446071) | |
| 845-1072, gnl|galGal2|chr2 (12770876-12770620) | |
| 845-1072, gnl|hg17|chr10 (34660040-34660295) | |
| 845-1072, gnl|Hg17|chr10 (34660280-34660053) | |
| 845-1072, gnl|loxAfr1|scaffold_7600 (14996-15250) | |
| 845-1072, gnl|mm7|chr8 (126024050-126023798) | |
| 845-1072, gnl|Mm7|chr8 (126023810-126024037) | |
| 845-1072, gnl|monDom2|scaffold_7 (34023476-34023228) | |
| 845-1072, gnl|oryCun1|scaffold_206239 (117372-117623) | |
| 845-1072, gnl|panTro1|chr8 (35083856-35084111) | |
| 845-1072, gnl|rheMac2|chr9 (34517400-34517653) | |
| 845-1072, gnl|rn3|chr19 (57399911-57399659) | |
| 845-1072, gnl|tetNig1|chr15 (1184136-1183898) | |
| 845-1072, gnl|xenTro1|scaffold_137 (1598390-1598131) | |
| 1075-1200, gnl|bosTau2|chr12 (29676588-29676713) | |
| 1075-1200, gnl|Hg17|chr10 (34646272-34646147) | |
| 1075-1200, gnl|Mm7|chr8 (126034764-126034889) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ton (0.1755) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ton (0.1755) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jej (0.0989218) |