Non-Coding RNA Search

Ss1.1-rjej03b_n10.5

Sequence:


               
               TGAGTGGTTGATTAATACAGGACATCGTCAGCAGTTGGACAGCCTTGTGCCTCCTACAGT
GGGCTCCAAACAAGCAGCAGGATAAAACTTCCTCATCAAAATGCTGGCCCTGGAAACATG
AGGATGAATGGGGGCTGGTGCACGTGTTGAAACAATACTGGGAAGGACTTCTTGCTGCTT
AAGACACTTTGGGGCTTTTTCTTCTTATTTAAGACCTTTCCTTAAGATTCCTCCCAATCT
CATTTGTTACTGTTTACTCTGAATTTTAGCTAAACTTCTGACTATCATATAAACATATTG
TTTATAGAACATCAGAAGGCTCATTTTGTGATGCTAAAATGAAAAAGTTGATGAAGGCAT
TGTATATATGGTAATGTTTGAGTGATTGTAGATTTACAAGCATCCTTCATATTTTAATTT
GTGTAATGAGAGGGTTTCATCCTTTCTAGGGTTAAGTTAAGTGTTTTATAGTTCTTTATA
ACTATTTAAAAGGAAATTGCTACTCCTTTAAAAAAAGAATTGGAATGAAAGTATGATTTT
CTTGGAGCATAAATGTAGCAGGAAGAGTTTTATACAAAGATATTTTAGTCCTTAAAGTAT
GCAACAATGAAATTTTGTAAAAATTTTTATTTTTTATTTCATTTTCTGCTTCAAATTTTC
AATAAACAAATTCTAAAAAGTAATTTTCTCCTTTTGATAAAACGATGAAACTTTACTTTT
CATTTCAGAGAGATTTCCAATGTTATTCTGTAGCATTCTATCCAAGTTGAGAAATCTGTG
TTCTTTAAGGTAAAGAAAAACAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTGGTTGATTAATACAGGACATCGTCAGCAGTTGGACAGCCTTGTGCCTCCTACAGT
GGGCTCCAAACAAGCAGCAGGATAAAACTTCCTCATCAAAATGCTGGCCCTGGAAACATG
AGGATGAATGGGGGCTGGTGCACGTGTTGAAACAATACTGGGAAGGACTTCTTGCTGCTT
AAGACACTTTGGGGCTTTTTCTTCTTATTTAAGACCTTTCCTTAAGATTCCTCCCAATCT
CATTTGTTACTGTTTACTCTGAATTTTAGCTAAACTTCTGACTATCATATAAACATATTG
TTTATAGAACATCAGAAGGCTCATTTTGTGATGCTAAAATGAAAAAGTTGATGAAGGCAT
TGTATATATGGTAATGTTTGAGTGATTGTAGATTTACAAGCATCCTTCATATTTTAATTT
GTGTAATGAGAGGGTTTCATCCTTTCTAGGGTTAAGTTAAGTGTTTTATAGTTCTTTATA
ACTATTTAAAAGGAAATTGCTACTCCTTTAAAAAAAGAATTGGAATGAAAGTATGATTTT
CTTGGAGCATAAATGTAGCAGGAAGAGTTTTATACAAAGATATTTTAGTCCTTAAAGTAT
GCAACAATGAAATTTTGTAAAAATTTTTATTTTTTATTTCATTTTCTGCTTCAAATTTTC
AATAAACAAATTCTAAAAAGTAATTTTCTCCTTTTGATAAAACGATGAAACTTTACTTTT
CATTTCAGAGAGATTTCCAATGTTATTCTGTAGCATTCTATCCAAGTTGAGAAATCTGTG
TTCTTTAAGGTAAAGAAAAACAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               106-765, gnl|bosTau2|chr1 (54714596-54713963)
               

               
               106-765, gnl|Hg17|chr3 (187747446-187746485)
               

               
               106-765, gnl|Mm7|chr16 (22475219-22474464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-765, gnl|bosTau2|chr1 (54714596-54713963)
               

               
               106-765, gnl|Hg17|chr3 (187747446-187746485)
               

               
               106-765, gnl|Mm7|chr16 (22475219-22474464)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               sin (0.349895)
               

               
               nms (0.213858)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               nms (0.213858)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	106-765, gnl\|bosTau2\|chr1 (54714596-54713963)
	106-765, gnl\|Hg17\|chr3 (187747446-187746485)
	106-765, gnl\|Mm7\|chr16 (22475219-22474464)

	amn (0.417711)
	sin (0.349895)
	nms (0.213858)
	lin (0.145603)
	pla (0.133672)
	thg (0.126791)
	pgl (0.118483)
	jej (0.0989218)