Non-Coding RNA Search

Ss1.1-rjej03b_p7.5

Sequence:


               
               CTCCCCACCCCTTCCCTGTCGCATATGCAACCCTAGTGTGAAATCCTGTAAATAGACGCT
CTGCTGAGCTGAGACCCTTCCTCATCAAAGCCTGAGGTGCAGGGGTGTTTTTGCTCTCCA
CCTCTAGCCCCTGGCCCATCACCCCATGTCCCTTTGTTCTGTGACAAACCCTATCTTTTT
CTTGTTTTTAAAGGGAAGCTTTTTAAGAAGGCAACTTTCATCATTGTTTCTACAGGATAG
TTTCTGTTTTTTCTGCTCCCCAGCTCCTGAGCCTGTCAGCCCCCCAAATGTCTCAGGACC
CCCCCCCTCCTGAGGGGGGTGGCAGGGGAGCCCAAGGCCGGGTGGCCCTGTCCACACCCC
AGCATCATGGGGCGAGCTCTTTCAGAGAACACCTGTGGAGGCCGAGCAGAGAGCTCAAGT
GCCCAGGCCAGCGACCCCCCCACCCACCCCAGCTCCCAGAGAGGTTCCCTGAGGGGACAG
TCCTCTCCCCACTACCCACACACCCCCTCGCAATAAAACCAACTGAAAAATCACAGCTGT
CATCCTGGCCAGAGGGGACAACTGGACTTGGGGGGTCGAGGCCTCTGGGACTACGGCGGG
GGTAAGGGCTGAACCCCGCCAAGCACATTTTAACACAAACCTCCTCGGGAATTGCACTAA
ACCCCTGCCCCTAGCTCTGCGCTCAGCTTCTGCCAGCCCTGCCCACCCACTCCGCCTTAA
CCCCTCTCCTGCTGCCCGTCCCCAGGGGCCACAGCATCTGCATGGGCCCAGAGCCGGGAC
CCCCGCCCTTCCAGCCCAGCCCCCCTCCAACTCCGCGCAATCACATACTGTATATAGACG
TGGATCAATTTTATTTTTATTCTTTAAATTAAGGTCGTGATAAAGTGTTGCCAAAGATAC
TGCTGAATTCTCGCGTTTCAGGAAACAAACAAACAAAAAAAATATTTGAGGGGGAACGTG
CTGACTGGTCAGAAAGGACACAGCANAAAGTTTTTTTGTTTGGTTGTTTGGGGTTTTTTT
TGTGGTTTCTTTTTTGGGGTGGTTTTTTTTTTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCCACCCCTTCCCTGTCGCATATGCAACCCTAGTGTGAAATCCTGTAAATAGACGCT
CTGCTGAGCTGAGACCCTTCCTCATCAAAGCCTGAGGTGCAGGGGTGTTTTTGCTCTCCA
CCTCTAGCCCCTGGCCCATCACCCCATGTCCCTTTGTTCTGTGACAAACCCTATCTTTTT
CTTGTTTTTAAAGGGAAGCTTTTTAAGAAGGCAACTTTCATCATTGTTTCTACAGGATAG
TTTCTGTTTTTTCTGCTCCCCAGCTCCTGAGCCTGTCAGCCCCCCAAATGTCTCAGGACC
CCCCCCCTCCTGAGGGGGGTGGCAGGGGAGCCCAAGGCCGGGTGGCCCTGTCCACACCCC
AGCATCATGGGGCGAGCTCTTTCAGAGAACACCTGTGGAGGCCGAGCAGAGAGCTCAAGT
GCCCAGGCCAGCGACCCCCCCACCCACCCCAGCTCCCAGAGAGGTTCCCTGAGGGGACAG
TCCTCTCCCCACTACCCACACACCCCCTCGCAATAAAACCAACTGAAAAATCACAGCTGT
CATCCTGGCCAGAGGGGACAACTGGACTTGGGGGGTCGAGGCCTCTGGGACTACGGCGGG
GGTAAGGGCTGAACCCCGCCAAGCACATTTTAACACAAACCTCCTCGGGAATTGCACTAA
ACCCCTGCCCCTAGCTCTGCGCTCAGCTTCTGCCAGCCCTGCCCACCCACTCCGCCTTAA
CCCCTCTCCTGCTGCCCGTCCCCAGGGGCCACAGCATCTGCATGGGCCCAGAGCCGGGAC
CCCCGCCCTTCCAGCCCAGCCCCCCTCCAACTCCGCGCAATCACATACTGTATATAGACG
TGGATCAATTTTATTTTTATTCTTTAAATTAAGGTCGTGATAAAGTGTTGCCAAAGATAC
TGCTGAATTCTCGCGTTTCAGGAAACAAACAAACAAAAAAAATATTTGAGGGGGAACGTG
CTGACTGGTCAGAAAGGACACAGCANAAAGTTTTTTTGTTTGGTTGTTTGGGGTTTTTTT
TGTGGTTTCTTTTTTGGGGTGGTTTTTTTTTTTAAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               93-202, - strand, RNAz p=0.56966
               

               
               243-379, - strand, RNAz p=0.944215
               

               
               411-518, + strand, RNAz p=0.616129

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-202, - strand, RNAz p=0.56966
               

               
               243-379, - strand, RNAz p=0.944215
               

               
               411-518, + strand, RNAz p=0.616129

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-379, gnl|bosTau2|chr7 (15787127-15786752)
               

               
               13-379, gnl|Hg17|chr19 (3996726-3996335)
               

               
               13-379, gnl|Mm7|chr10 (80942050-80942376)
               


               
               411-1053, gnl|bosTau2|chr7 (15786757-15786086)
               

               
               411-1053, gnl|Hg17|chr19 (3996382-3995715)
               

               
               411-1053, gnl|Mm7|chr10 (80942372-80942998)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-379, gnl|bosTau2|chr7 (15787127-15786752)
               

               
               13-379, gnl|Hg17|chr19 (3996726-3996335)
               

               
               13-379, gnl|Mm7|chr10 (80942050-80942376)
               


               
               411-1053, gnl|bosTau2|chr7 (15786757-15786086)
               

               
               411-1053, gnl|Hg17|chr19 (3996382-3995715)
               

               
               411-1053, gnl|Mm7|chr10 (80942372-80942998)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	93-202, - strand, RNAz p=0.56966
	243-379, - strand, RNAz p=0.944215
	411-518, + strand, RNAz p=0.616129

	13-379, gnl\|bosTau2\|chr7 (15787127-15786752)
	13-379, gnl\|Hg17\|chr19 (3996726-3996335)
	13-379, gnl\|Mm7\|chr10 (80942050-80942376)

	411-1053, gnl\|bosTau2\|chr7 (15786757-15786086)
	411-1053, gnl\|Hg17\|chr19 (3996382-3995715)
	411-1053, gnl\|Mm7\|chr10 (80942372-80942998)

	nlu (0.191681)
	nep (0.183925)
	ill (0.175593)
	eye (0.170503)
	fhi (0.169578)
	nca (0.136874)
	ebs (0.118301)
	ecc (0.115035)
	jej (0.0989218)