Ss1.1-rjej04b_c7.5
|
GACTCCTCCAGCCGCCAGGGGGAGCCCGCGTCATTCCTGCCTCTCTGGCCCGTGCCTCCC
GCCGGTGGGTAGATATCCCAGAGTTCCGCGCGGTGGAGGCCCTTCCGCCGCGGCAGCCAT
TGGAGAGAGGCAGGTTAGTGGGGCTTTGGAAAGGTGGGATCCGCTCCCATCCAGGCCTCT
GGGCCCCAGTGCAGCCCGAGGGTGTGGTTGGGTGCGGCGAGCGAGCCCCGGGTAGCAGAG
GCTCGGAGTTCCGGGCGTCAGGGGCCGAGCCGAGGCTCACCTTCACCCCTTCTCCCCTTC
AGCCATTGGAGAGAGGCAGCCATGGCTCTGCGCTACCCCATGGCTGTGGGCCTCAACAAG
GGCCATAAAGTGACCAAGAACGTGAGCAAGCCGAGGCACAGCCGCCGCCGCGGGCGCCTC
ACCAAGCACACCAAGTTTGTACGGGACATGATCCGGGAGGTGTGCGGCTTTGCGCCTTAT
GAGCGGCGGGCCATGGAGCTGCTCAAGGTCTCCAAAGACAAGCGGGCCCTCAAGTTCATC
AAGAAAAGGGTGGGGACACATATCCGTGCCAAGAGGAAGAGAGAGGAGCTGAGCAATGTT
CTAGCGGCCATGAGGAAAGCAGCAGCCAAGAAGGACTGAGCCCCCTCCCCTCTGTGCCTA
ATAAAGCCTTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACCAGGGTAGGGGGGCACCCTGGTGAGGGGCATGGTG
GTAGACACACAGCCACATAGGCAAGCAGTACTGGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACTCCTCCAGCCGCCAGGGGGAGCCCGCGTCATTCCTGCCTCTCTGGCCCGTGCCTCCC
GCCGGTGGGTAGATATCCCAGAGTTCCGCGCGGTGGAGGCCCTTCCGCCGCGGCAGCCAT
TGGAGAGAGGCAGGTTAGTGGGGCTTTGGAAAGGTGGGATCCGCTCCCATCCAGGCCTCT
GGGCCCCAGTGCAGCCCGAGGGTGTGGTTGGGTGCGGCGAGCGAGCCCCGGGTAGCAGAG
GCTCGGAGTTCCGGGCGTCAGGGGCCGAGCCGAGGCTCACCTTCACCCCTTCTCCCCTTC
AGCCATTGGAGAGAGGCAGCCATGGCTCTGCGCTACCCCATGGCTGTGGGCCTCAACAAG
GGCCATAAAGTGACCAAGAACGTGAGCAAGCCGAGGCACAGCCGCCGCCGCGGGCGCCTC
ACCAAGCACACCAAGTTTGTACGGGACATGATCCGGGAGGTGTGCGGCTTTGCGCCTTAT
GAGCGGCGGGCCATGGAGCTGCTCAAGGTCTCCAAAGACAAGCGGGCCCTCAAGTTCATC
AAGAAAAGGGTGGGGACACATATCCGTGCCAAGAGGAAGAGAGAGGAGCTGAGCAATGTT
CTAGCGGCCATGAGGAAAGCAGCAGCCAAGAAGGACTGAGCCCCCTCCCCTCTGTGCCTA
ATAAAGCCTTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACCAGGGTAGGGGGGCACCCTGGTGAGGGGCATGGTG
GTAGACACACAGCCACATAGGCAAGCAGTACTGGAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
288-714, gnl|bosTau2|chr5 (20967885-20967457) |
|
288-714, gnl|Hg17|chr14 (72466425-72466002) |
|
288-714, gnl|Mm7|chr2 (32279121-32279538) |
| |
|
300-694, gnl|bosTau2|chr22 (38998959-38999350) |
|
300-694, gnl|Hg17|chr9 (108468646-108469044) |
|
300-694, gnl|Mm7|chr12 (12974691-12975076) |
| |
|
317-684, gnl|bosTau2|chr19 (35604101-35603729) |
|
317-684, gnl|Hg17|chr17 (34406419-34406059) |
|
317-684, gnl|Mm7|chr12 (12974708-12975073) |
| |
|
445-683, gnl|bosTau2|chr17 (37073930-37073703) |
|
445-683, gnl|dasNov1|scaffold_855 (89808-89855) |
|
445-683, gnl|hg17|chr12 (111176173-111176233) |
|
445-683, gnl|loxAfr1|scaffold_10157 (42756-42691) |
|
445-683, gnl|Mm7|chr12 (12974836-12975050) |
|
445-683, gnl|mm7|chr5 (120513645-120513594) |
|
445-683, gnl|oryCun1|scaffold_138311 (5523-5480) |
|
445-683, gnl|panTro1|chr10 (113875647-113875707) |
|
445-683, gnl|rheMac2|chr11 (113197600-113197658) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
288-714, gnl|bosTau2|chr5 (20967885-20967457) |
|
288-714, gnl|Hg17|chr14 (72466425-72466002) |
|
288-714, gnl|Mm7|chr2 (32279121-32279538) |
| |
|
300-694, gnl|bosTau2|chr22 (38998959-38999350) |
|
300-694, gnl|Hg17|chr9 (108468646-108469044) |
|
300-694, gnl|Mm7|chr12 (12974691-12975076) |
| |
|
317-684, gnl|bosTau2|chr19 (35604101-35603729) |
|
317-684, gnl|Hg17|chr17 (34406419-34406059) |
|
317-684, gnl|Mm7|chr12 (12974708-12975073) |
| |
|
445-683, gnl|bosTau2|chr17 (37073930-37073703) |
|
445-683, gnl|dasNov1|scaffold_855 (89808-89855) |
|
445-683, gnl|hg17|chr12 (111176173-111176233) |
|
445-683, gnl|loxAfr1|scaffold_10157 (42756-42691) |
|
445-683, gnl|Mm7|chr12 (12974836-12975050) |
|
445-683, gnl|mm7|chr5 (120513645-120513594) |
|
445-683, gnl|oryCun1|scaffold_138311 (5523-5480) |
|
445-683, gnl|panTro1|chr10 (113875647-113875707) |
|
445-683, gnl|rheMac2|chr11 (113197600-113197658) |
|
mcp (4.43686) |
|
cag (4.08225) |
|
elu (2.6975) |
|
eje (2.56968) |
|
cga (2.51186) |
|
cly (2.29219) |
|
cov (2.11444) |
|
fli (2.02881) |
|
med (1.97628) |
|
pty (1.85529) |
|
lnt (1.7077) |
|
nje (1.6592) |
|
csp (1.61186) |
|
fce (1.35796) |
|
nbm (1.29122) |
|
ese (1.26502) |
|
amn (1.25313) |
|
nca (1.23186) |
|
eru (1.08043) |
|
fty (1.05504) |
|
mas (1.05152) |
|
ecc (1.03532) |
|
hlv (0.974795) |
|
nep (0.919625) |
|
jej (0.890296) |
|
ebs (0.828108) |
|
nco (0.808669) |
|
jca (0.797721) |
|
nmm (0.796813) |
|
col (0.780031) |
|
nlu (0.766724) |
|
cli (0.764059) |
|
eli (0.759071) |
|
hyp (0.714184) |
|
ton (0.702001) |
|
eye (0.682012) |
|
nms (0.641574) |
|
eep (0.61282) |
|
fbs (0.526039) |
|
fhi (0.508733) |
|
ece (0.45861) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
fcc (0.39557) |
|
ill (0.351185) |
|
duo (0.345602) |
|
cst (0.280073) |
|
cki (0.165235) |
|
spl (0.143184) |
|
che (0.136314) |
|
mcp (4.43686) |
|
cag (4.08225) |
|
elu (2.6975) |
|
eje (2.56968) |
|
cga (2.51186) |
|
cly (2.29219) |
|
cov (2.11444) |
|
fli (2.02881) |
|
med (1.97628) |
|
pty (1.85529) |
|
lnt (1.7077) |
|
nje (1.6592) |
|
csp (1.61186) |
|
fce (1.35796) |
|
nbm (1.29122) |
|
ese (1.26502) |
|
amn (1.25313) |
|
nca (1.23186) |
|
eru (1.08043) |
|
fty (1.05504) |
|
mas (1.05152) |
|
ecc (1.03532) |
|
hlv (0.974795) |
|
nep (0.919625) |
|
jej (0.890296) |
|
ebs (0.828108) |
|
nco (0.808669) |
|
jca (0.797721) |
|
nmm (0.796813) |
|
col (0.780031) |
|
nlu (0.766724) |
|
cli (0.764059) |
|
eli (0.759071) |
|
hyp (0.714184) |
|
ton (0.702001) |
|
eye (0.682012) |
|
nms (0.641574) |
|
eep (0.61282) |
|
fbs (0.526039) |
|
fhi (0.508733) |
|
ece (0.45861) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
fcc (0.39557) |
|
ill (0.351185) |
|
duo (0.345602) |
|
cst (0.280073) |
|
cki (0.165235) |
|
spl (0.143184) |
|
che (0.136314) |
