Ss1.1-rjej04b_l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTTCCCTTTGATTGACTTCATATAATCTTTGATGTACTTCTTGTAAGCTTCCTTTGTG AAGCTGGTTTCCTGCAGGTGATGGTTCATGACAATATCGACACCAGTGATTACTGTGCTT TCGGTGGACTGGGGCCTCCCACCAGCCTCCGCTCCACCATGAAGCTGGCCGTCACCTTCA CCTTGGTTGCCCTGATCTTCTTCTGCAGCCCTGCTTCTGCAGAGGTCTGCCCGAGCTTTG TAGAAGTCATTCAAAACCTCTTCAAGGGCACACTTGCCAGTTACCAGGCTTCAGTTGAAC CTTTCAGCCCCAACGAAGACATGAAAAAGGCGGGGGCCCAGCTGAAGACGCTGGTGGACA CTCTCTCTCCGGAGGCCAAGGACAGTGTGTTAAAACTCCAGGAAAAAATCATAAAAAGCC CACTGTGTGCTTAGGATTTGGAACCTGAAGACCTTCATCTCTGGAGGCCCTGACACCCCC AGCCGCTTCCTCCCCTCCATCCCCACCAGCCCACCCTGACTCCCTACAATAAAGTCCAAG CATCTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTTCCCTTTGATTGACTTCATATAATCTTTGATGTACTTCTTGTAAGCTTCCTTTGTG AAGCTGGTTTCCTGCAGGTGATGGTTCATGACAATATCGACACCAGTGATTACTGTGCTT TCGGTGGACTGGGGCCTCCCACCAGCCTCCGCTCCACCATGAAGCTGGCCGTCACCTTCA CCTTGGTTGCCCTGATCTTCTTCTGCAGCCCTGCTTCTGCAGAGGTCTGCCCGAGCTTTG TAGAAGTCATTCAAAACCTCTTCAAGGGCACACTTGCCAGTTACCAGGCTTCAGTTGAAC CTTTCAGCCCCAACGAAGACATGAAAAAGGCGGGGGCCCAGCTGAAGACGCTGGTGGACA CTCTCTCTCCGGAGGCCAAGGACAGTGTGTTAAAACTCCAGGAAAAAATCATAAAAAGCC CACTGTGTGCTTAGGATTTGGAACCTGAAGACCTTCATCTCTGGAGGCCCTGACACCCCC AGCCGCTTCCTCCCCTCCATCCCCACCAGCCCACCCTGACTCCCTACAATAAAGTCCAAG CATCTCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-114, + strand, RNAz p=0.61232 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-114, + strand, RNAz p=0.61232 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr10 (45753280-45753393) | |
| 1-114, gnl|hg17|chr14 (54375493-54375602) | |
| 1-114, gnl|Mm7|chr6 (99966101-99966214) | |
| 1-114, gnl|panTro1|chr15 (53826163-53826273) | |
| 1-114, gnl|rheMac2|chr7 (117861310-117861423) | |
| 213-402, gnl|bosTau2|chr29 (31911645-31911834) | |
| 213-402, gnl|canFam2|chr18 (57214880-57214443) | |
| 213-402, gnl|hg17|chr11 (61946127-61946530) | |
| 213-402, gnl|Hg17|chr11 (61946268-61946457) | |
| 213-402, gnl|mm7|chr19 (8765669-8765306) | |
| 213-402, gnl|Mm7|chr19 (8765538-8765349) | |
| 213-402, gnl|oryCun1|scaffold_193531 (4293-4675) | |
| 213-402, gnl|panTro1|chr9 (62924489-62924892) | |
| 213-402, gnl|rheMac2|chr14 (11677874-11677471) | |
| 213-402, gnl|rn3|chr1 (211918412-211918038) | |
| 405-542, gnl|bosTau2|chr29 (31912702-31912840) | |
| 405-542, gnl|canFam2|chr18 (57214144-57213751) | |
| 405-542, gnl|hg17|chr11 (61946958-61947336) | |
| 405-542, gnl|Hg17|chr11 (61947110-61947234) | |
| 405-542, gnl|mm7|chr19 (8764108-8763711) | |
| 405-542, gnl|oryCun1|scaffold_193531 (4812-5198) | |
| 405-542, gnl|panTro1|chr9 (62925322-62925700) | |
| 405-542, gnl|rheMac2|chr14 (11677080-11676695) | |
| 405-542, gnl|rn3|chr1 (211916826-211916440) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr10 (45753280-45753393) | |
| 1-114, gnl|hg17|chr14 (54375493-54375602) | |
| 1-114, gnl|Mm7|chr6 (99966101-99966214) | |
| 1-114, gnl|panTro1|chr15 (53826163-53826273) | |
| 1-114, gnl|rheMac2|chr7 (117861310-117861423) | |
| 213-402, gnl|bosTau2|chr29 (31911645-31911834) | |
| 213-402, gnl|canFam2|chr18 (57214880-57214443) | |
| 213-402, gnl|hg17|chr11 (61946127-61946530) | |
| 213-402, gnl|Hg17|chr11 (61946268-61946457) | |
| 213-402, gnl|mm7|chr19 (8765669-8765306) | |
| 213-402, gnl|Mm7|chr19 (8765538-8765349) | |
| 213-402, gnl|oryCun1|scaffold_193531 (4293-4675) | |
| 213-402, gnl|panTro1|chr9 (62924489-62924892) | |
| 213-402, gnl|rheMac2|chr14 (11677874-11677471) | |
| 213-402, gnl|rn3|chr1 (211918412-211918038) | |
| 405-542, gnl|bosTau2|chr29 (31912702-31912840) | |
| 405-542, gnl|canFam2|chr18 (57214144-57213751) | |
| 405-542, gnl|hg17|chr11 (61946958-61947336) | |
| 405-542, gnl|Hg17|chr11 (61947110-61947234) | |
| 405-542, gnl|mm7|chr19 (8764108-8763711) | |
| 405-542, gnl|oryCun1|scaffold_193531 (4812-5198) | |
| 405-542, gnl|panTro1|chr9 (62925322-62925700) | |
| 405-542, gnl|rheMac2|chr14 (11677080-11676695) | |
| 405-542, gnl|rn3|chr1 (211916826-211916440) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| nlu (0.191681) |