Non-Coding RNA Search

Ss1.1-rjej05b_b14.5

Sequence:


               
               CTGTCAAGAACTTTAAAAATGTTTATATCTTCTGATCCTCTAATTCCACTTCTGGGAATC
TCTCCTAAAGAAATAGTCTAAAATGCGGGCAAAATTTATGCTTAACAATCCAGAAGTCCA
ACCGTAAAAAATTGGTCAAGTCACTTACGATGTGACCATACCATAGACTGTCATGCTGTC
ATTGTGATTAACGTTTGTGAAGTGTTGAAGCTGCATGGCCAAACTCTTATCACGTTACGT
GAAAGAGTGATATACAAGATTATATCCATAAATCTAAAAATATTTCTCTAGGAGTTCCCA
TCGTGGCGCAGTGGAAACGAATCCTCCTGGGAACCATGAGGTTGTGGGTTCAATCCCTGG
CCTTGCTCAGGAGGTTAAGGATCTGGTGTTGCCGTGGGCTGTGGTGTAGGTCACAGATTT
GGCTTGGATCAGATGGTGCTGTGGCTGTGGTGTCGGCCAGCAGCTATAGCTCTGATTTAA
TCCCTAGCCTGGGAACCTCCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCAAGAACTTTAAAAATGTTTATATCTTCTGATCCTCTAATTCCACTTCTGGGAATC
TCTCCTAAAGAAATAGTCTAAAATGCGGGCAAAATTTATGCTTAACAATCCAGAAGTCCA
ACCGTAAAAAATTGGTCAAGTCACTTACGATGTGACCATACCATAGACTGTCATGCTGTC
ATTGTGATTAACGTTTGTGAAGTGTTGAAGCTGCATGGCCAAACTCTTATCACGTTACGT
GAAAGAGTGATATACAAGATTATATCCATAAATCTAAAAATATTTCTCTAGGAGTTCCCA
TCGTGGCGCAGTGGAAACGAATCCTCCTGGGAACCATGAGGTTGTGGGTTCAATCCCTGG
CCTTGCTCAGGAGGTTAAGGATCTGGTGTTGCCGTGGGCTGTGGTGTAGGTCACAGATTT
GGCTTGGATCAGATGGTGCTGTGGCTGTGGTGTCGGCCAGCAGCTATAGCTCTGATTTAA
TCCCTAGCCTGGGAACCTCCACAT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-290, gnl|bosTau2|chr9 (7624469-7624185)
               

               
               1-290, gnl|canFam2|chr21 (25289969-25289721)
               

               
               1-290, gnl|dasNov1|scaffold_59392 (1912-1663)
               

               
               1-290, gnl|echTel1|scaffold_303618 (43001-43239)
               

               
               1-290, gnl|hg17|chr11 (75777614-75777863)
               

               
               1-290, gnl|Hg17|chr11 (75777642-75778013)
               

               
               1-290, gnl|loxAfr1|scaffold_5968 (42036-42279)
               

               
               1-290, gnl|Mm7|chr7 (94729971-94729690)
               

               
               1-290, gnl|oryCun1|scaffold_175412 (6606-6356)
               

               
               1-290, gnl|panTro1|chr9 (77072161-77072410)
               

               
               1-290, gnl|rheMac2|chr14 (74567305-74567552)
               

               
               1-290, gnl|rn3|chr1 (156053822-156053587)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr9 (7624469-7624185)
               

               
               1-290, gnl|canFam2|chr21 (25289969-25289721)
               

               
               1-290, gnl|dasNov1|scaffold_59392 (1912-1663)
               

               
               1-290, gnl|echTel1|scaffold_303618 (43001-43239)
               

               
               1-290, gnl|hg17|chr11 (75777614-75777863)
               

               
               1-290, gnl|Hg17|chr11 (75777642-75778013)
               

               
               1-290, gnl|loxAfr1|scaffold_5968 (42036-42279)
               

               
               1-290, gnl|Mm7|chr7 (94729971-94729690)
               

               
               1-290, gnl|oryCun1|scaffold_175412 (6606-6356)
               

               
               1-290, gnl|panTro1|chr9 (77072161-77072410)
               

               
               1-290, gnl|rheMac2|chr14 (74567305-74567552)
               

               
               1-290, gnl|rn3|chr1 (156053822-156053587)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-290, gnl\|bosTau2\|chr9 (7624469-7624185)
	1-290, gnl\|canFam2\|chr21 (25289969-25289721)
	1-290, gnl\|dasNov1\|scaffold_59392 (1912-1663)
	1-290, gnl\|echTel1\|scaffold_303618 (43001-43239)
	1-290, gnl\|hg17\|chr11 (75777614-75777863)
	1-290, gnl\|Hg17\|chr11 (75777642-75778013)
	1-290, gnl\|loxAfr1\|scaffold_5968 (42036-42279)
	1-290, gnl\|Mm7\|chr7 (94729971-94729690)
	1-290, gnl\|oryCun1\|scaffold_175412 (6606-6356)
	1-290, gnl\|panTro1\|chr9 (77072161-77072410)
	1-290, gnl\|rheMac2\|chr14 (74567305-74567552)
	1-290, gnl\|rn3\|chr1 (156053822-156053587)