Non-Coding RNA Search

Ss1.1-rjej05b_i4.5

Sequence:


               
               CACATTAATCTTCACATCCGCGGAGGATACATCCTGCCCTGGCAAGAGCCCGCACAGAAC
ACCTACTTCAGCCGTCAGAAATTCATGGGCTTCAAGGTTGCCTTGGATGATGATGGGACC
GCTGAAGGTTGGCTCTTCTGGGATGATGGGCAAAGCATTGATACCTATGAACAAGGACTC
TATTACCTGGCCAACTTTTCTGTCAGCCAGAATACGATGCAGAGTCATGTAATTTTCAAC
AAATACATCAGTGATGCAAACCCTTTGAAACTGGGCTACATTGAGATCTGGGGAGTGGGC
AGTGCCCCCATTTCCAGTGTGAGCATCTCTGCGAGCGGCGAGGTTATAACACCTATCTTC
ATCCACGACTCTGCAACACAGGTGTTAAACATTAACGTGACCAACGGAAACCTCAGCCTA
CATAATTTCAGTTCCTTGACGTGGACAAGTGCTCCGGATTCTTAGAGCAAGATCCTAACT
ACACATGGCTTTGAAACTACTTCTACTTCACGCTCATGAAATTATTGTGTGTTTCTAATT
GATTCATGCCCAGTATGGGTAAAATATTTTATTAATTTTATGTTCTGTCTGTGGCGTAGC
CCTGTGGTATAGGCAGTAGGGAAGTGTGGAAAACTGTGGGTTACCTTCATGTCTCAGTGT
GATTAGTACGGTCCTGATGGCGCCTCATACAAAATTTACTGAAGATTCACTGGGCACATG
ATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTAATCAGGGAATGGGCCCAC
CTTTGCCGAATACGCAAGAGGCATCTGACCAGGACAGTTCAGATCTAGAGCTAACTAACA
TCTCAACGAAGTACCCAGAAAGAACATCTGCTCCCTGTGGTTATAGGGAGATGAGCTGAC
ATGCTAAGAGCATATATAAGGGCAAGAAAAGGCAAAGGCAGGAAAGGTAAACAGGGACGA
TGAGAGGGAATGGATGATGCGGATAAAAGCGATCACGACAAGGTGGAAGGTAACAGTAAG
ATATTAGGAGTGATAGCCTCGTGGGGAGGAAGGAAGGAAGGGCCAAGTCTCGTGAAGGCA
AGAGTAAGGTTAGGATAAATCCTTAGCATGTGGGCGTAGGGCTGGGGACAAGATTTAAGC
AGGAAAAGCTGAAGGAAGGAGTTTGAATGTAAAAAATGACTCACTTTTGCAATGGTGTGC
TTCAAAATATGTAAATTTTATTTCTCTACTCTGTGCCTAATGTATATAACTACAGTTGAC
ACAAATGCATACAATTTACATGCCAAAGAAAAATAAAACAGATTTACAAGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACATTAATCTTCACATCCGCGGAGGATACATCCTGCCCTGGCAAGAGCCCGCACAGAAC
ACCTACTTCAGCCGTCAGAAATTCATGGGCTTCAAGGTTGCCTTGGATGATGATGGGACC
GCTGAAGGTTGGCTCTTCTGGGATGATGGGCAAAGCATTGATACCTATGAACAAGGACTC
TATTACCTGGCCAACTTTTCTGTCAGCCAGAATACGATGCAGAGTCATGTAATTTTCAAC
AAATACATCAGTGATGCAAACCCTTTGAAACTGGGCTACATTGAGATCTGGGGAGTGGGC
AGTGCCCCCATTTCCAGTGTGAGCATCTCTGCGAGCGGCGAGGTTATAACACCTATCTTC
ATCCACGACTCTGCAACACAGGTGTTAAACATTAACGTGACCAACGGAAACCTCAGCCTA
CATAATTTCAGTTCCTTGACGTGGACAAGTGCTCCGGATTCTTAGAGCAAGATCCTAACT
ACACATGGCTTTGAAACTACTTCTACTTCACGCTCATGAAATTATTGTGTGTTTCTAATT
GATTCATGCCCAGTATGGGTAAAATATTTTATTAATTTTATGTTCTGTCTGTGGCGTAGC
CCTGTGGTATAGGCAGTAGGGAAGTGTGGAAAACTGTGGGTTACCTTCATGTCTCAGTGT
GATTAGTACGGTCCTGATGGCGCCTCATACAAAATTTACTGAAGATTCACTGGGCACATG
ATGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTAATCAGGGAATGGGCCCAC
CTTTGCCGAATACGCAAGAGGCATCTGACCAGGACAGTTCAGATCTAGAGCTAACTAACA
TCTCAACGAAGTACCCAGAAAGAACATCTGCTCCCTGTGGTTATAGGGAGATGAGCTGAC
ATGCTAAGAGCATATATAAGGGCAAGAAAAGGCAAAGGCAGGAAAGGTAAACAGGGACGA
TGAGAGGGAATGGATGATGCGGATAAAAGCGATCACGACAAGGTGGAAGGTAACAGTAAG
ATATTAGGAGTGATAGCCTCGTGGGGAGGAAGGAAGGAAGGGCCAAGTCTCGTGAAGGCA
AGAGTAAGGTTAGGATAAATCCTTAGCATGTGGGCGTAGGGCTGGGGACAAGATTTAAGC
AGGAAAAGCTGAAGGAAGGAGTTTGAATGTAAAAAATGACTCACTTTTGCAATGGTGTGC
TTCAAAATATGTAAATTTTATTTCTCTACTCTGTGCCTAATGTATATAACTACAGTTGAC
ACAAATGCATACAATTTACATGCCAAAGAAAAATAAAACAGATTTACAAGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               661-779, + strand, RNAz p=0.996987

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               661-779, + strand, RNAz p=0.996987

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004668, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004668, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               208-383, gnl|bosTau2|chr4 (58176822-58176647)
               

               
               208-383, gnl|Hg17|chr7 (141256250-141256425)
               

               
               208-383, gnl|Mm7|chr6 (40695908-40696083)
               


               
               506-1311, gnl|bosTau2|chr4 (58174370-58173553)
               

               
               506-1311, gnl|Hg17|chr7 (141259040-141259729)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               208-383, gnl|bosTau2|chr4 (58176822-58176647)
               

               
               208-383, gnl|Hg17|chr7 (141256250-141256425)
               

               
               208-383, gnl|Mm7|chr6 (40695908-40696083)
               


               
               506-1311, gnl|bosTau2|chr4 (58174370-58173553)
               

               
               506-1311, gnl|Hg17|chr7 (141259040-141259729)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               sin (1.57453)
               

               
               jej (1.08814)
               

               
               lun (0.601956)
               

               
               ill (0.351185)
               

               
               cje (0.330469)
               

               
               pan (0.23596)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               liv (0.146284)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (1.57453)
               

               
               jej (1.08814)
               

               
               lun (0.601956)
               

               
               ill (0.351185)
               

               
               cje (0.330469)
               

               
               pan (0.23596)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               liv (0.146284)

	208-383, gnl\|bosTau2\|chr4 (58176822-58176647)
	208-383, gnl\|Hg17\|chr7 (141256250-141256425)
	208-383, gnl\|Mm7\|chr6 (40695908-40696083)

	506-1311, gnl\|bosTau2\|chr4 (58174370-58173553)
	506-1311, gnl\|Hg17\|chr7 (141259040-141259729)

	sin (1.57453)
	jej (1.08814)
	lun (0.601956)
	ill (0.351185)
	cje (0.330469)
	pan (0.23596)
	nje (0.16592)
	cli (0.152812)
	liv (0.146284)