Non-Coding RNA Search

Ss1.1-rjej05b_l9.5.5

Sequence:


               
               CAGGCTTGTTTTTTCCCTCTGGACCTGGGAACCTGAGGCTCACTTTCACTCGCTGCCTGT
CCTTCGCAGGCACCTTGCCATGTGCACGGGAAAGTGTGCCCGCTTTGTGGGGCTCTCCCT
CATCCCCCTCTCCCTGGTCTGCATCGTGGCCAACGCCCTCCTGCTGGTGCCCAACGCGAA
GACCACCTGGACCAAGGACCACCTCAGCTTGCAAGTCTGGCTCATGGCTGGCTTCATCGG
CGGGGGTCTGATGGTACTGTGTCCGGGAATCGCCGCTGTTCGAGCAGGCGGCAAAGGCTG
TTGTGGTGCAGGCTGCTGTGGAAATCGCTGCAGGATGCTGCGCTCGGTCTTCTGCTCGGC
GTTCGGGATGCTGGGTGCCATCTACTGCCTCTCGGTATCGGGAGCCGGGCTCCGAACTGG
ACCCAAATGCTTTATGAACGGCTCTTGGGGTTACCACTTCGAAGAGACCGCAGGCTCTTA
CCTGCTCAACCGCACCCAGTGGAGCTTGTGCGTGGAGCCCCCCGGTGTGGTCTATTGGAA
CGTGACGCTCTTCTCGCTGCTGGTGGCCGCCTCGTGCCTGGAGATCTTGCTGTGTGGGGT
GCAGTTGGTGAATGCGTGCATTGGTGTCTTCTGTGGCGACTGCAGGAAGGAGGGCGCCCG
TCAGTGAGACTCCACCGACCTGGTCTGTTGCTCCTGGATACCCACCTGGCCCGCCCCCGC
CCTGGAATAAACTCTTACCAGCTCTCTTCCACGTCTCTAATTGCGCCCTATAAAGGGAAT
GTCCGATGGCCTTCAGATACATCGGAGCTCCGGGCTCTCATGTTTGGAGCCCTTGCACCC
TGCCTGTTTTCTTAATAAATAATTATTGAGCTGTTGGTGCGCTGGAAACACAGTGTAAAC
AAGACAGGCAAGGTCTGTGCTCTGAAAGAATTTAACATTCCAGAAGTAGAAGATGGACAC
CTTTTAAAAGTGGCACTAGAGGAGTTCCCCGTGGCTGCAGCGGATTAAGGATCCTGGGTT
GTCTCTGCAGCGTTTTGGGTTGCTGTGGAGGCATGGGTGGGACCCCTAGCCTGGGAACTT
CCCTATGCCTGTGGATGCGTCAATAAACAAACAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTTGTTTTTTCCCTCTGGACCTGGGAACCTGAGGCTCACTTTCACTCGCTGCCTGT
CCTTCGCAGGCACCTTGCCATGTGCACGGGAAAGTGTGCCCGCTTTGTGGGGCTCTCCCT
CATCCCCCTCTCCCTGGTCTGCATCGTGGCCAACGCCCTCCTGCTGGTGCCCAACGCGAA
GACCACCTGGACCAAGGACCACCTCAGCTTGCAAGTCTGGCTCATGGCTGGCTTCATCGG
CGGGGGTCTGATGGTACTGTGTCCGGGAATCGCCGCTGTTCGAGCAGGCGGCAAAGGCTG
TTGTGGTGCAGGCTGCTGTGGAAATCGCTGCAGGATGCTGCGCTCGGTCTTCTGCTCGGC
GTTCGGGATGCTGGGTGCCATCTACTGCCTCTCGGTATCGGGAGCCGGGCTCCGAACTGG
ACCCAAATGCTTTATGAACGGCTCTTGGGGTTACCACTTCGAAGAGACCGCAGGCTCTTA
CCTGCTCAACCGCACCCAGTGGAGCTTGTGCGTGGAGCCCCCCGGTGTGGTCTATTGGAA
CGTGACGCTCTTCTCGCTGCTGGTGGCCGCCTCGTGCCTGGAGATCTTGCTGTGTGGGGT
GCAGTTGGTGAATGCGTGCATTGGTGTCTTCTGTGGCGACTGCAGGAAGGAGGGCGCCCG
TCAGTGAGACTCCACCGACCTGGTCTGTTGCTCCTGGATACCCACCTGGCCCGCCCCCGC
CCTGGAATAAACTCTTACCAGCTCTCTTCCACGTCTCTAATTGCGCCCTATAAAGGGAAT
GTCCGATGGCCTTCAGATACATCGGAGCTCCGGGCTCTCATGTTTGGAGCCCTTGCACCC
TGCCTGTTTTCTTAATAAATAATTATTGAGCTGTTGGTGCGCTGGAAACACAGTGTAAAC
AAGACAGGCAAGGTCTGTGCTCTGAAAGAATTTAACATTCCAGAAGTAGAAGATGGACAC
CTTTTAAAAGTGGCACTAGAGGAGTTCCCCGTGGCTGCAGCGGATTAAGGATCCTGGGTT
GTCTCTGCAGCGTTTTGGGTTGCTGTGGAGGCATGGGTGGGACCCCTAGCCTGGGAACTT
CCCTATGCCTGTGGATGCGTCAATAAACAAACAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57086353|ref|XP_536611.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57086353|ref|XP_536611.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-255, gnl|bosTau2|chr19 (14462676-14462425)
               

               
               3-255, gnl|Hg17|chr17 (4621894-4622145)
               

               
               3-255, gnl|Mm7|chr11 (70586819-70587080)
               


               
               334-471, gnl|bosTau2|chr19 (14457187-14457050)
               

               
               334-471, gnl|Hg17|chr17 (4632544-4632681)
               

               
               334-471, gnl|Mm7|chr11 (70591788-70591925)
               


               
               651-987, gnl|bosTau2|chr19 (14456535-14456210)
               

               
               651-987, gnl|Hg17|chr17 (4633154-4633489)
               

               
               651-987, gnl|Mm7|chr11 (70592414-70592789)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-255, gnl|bosTau2|chr19 (14462676-14462425)
               

               
               3-255, gnl|Hg17|chr17 (4621894-4622145)
               

               
               3-255, gnl|Mm7|chr11 (70586819-70587080)
               


               
               334-471, gnl|bosTau2|chr19 (14457187-14457050)
               

               
               334-471, gnl|Hg17|chr17 (4632544-4632681)
               

               
               334-471, gnl|Mm7|chr11 (70591788-70591925)
               


               
               651-987, gnl|bosTau2|chr19 (14456535-14456210)
               

               
               651-987, gnl|Hg17|chr17 (4633154-4633489)
               

               
               651-987, gnl|Mm7|chr11 (70592414-70592789)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               jej (0.692452)
               

               
               duo (0.518403)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.692452)
               

               
               duo (0.518403)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	3-255, gnl\|bosTau2\|chr19 (14462676-14462425)
	3-255, gnl\|Hg17\|chr17 (4621894-4622145)
	3-255, gnl\|Mm7\|chr11 (70586819-70587080)

	334-471, gnl\|bosTau2\|chr19 (14457187-14457050)
	334-471, gnl\|Hg17\|chr17 (4632544-4632681)
	334-471, gnl\|Mm7\|chr11 (70591788-70591925)

	651-987, gnl\|bosTau2\|chr19 (14456535-14456210)
	651-987, gnl\|Hg17\|chr17 (4633154-4633489)
	651-987, gnl\|Mm7\|chr11 (70592414-70592789)

	jej (0.692452)
	duo (0.518403)
	cje (0.165235)
	nco (0.161734)
	ute (0.132784)
	cov (0.132153)