Non-Coding RNA Search

Ss1.1-rjej05b_p11.5

Sequence:


               
               TTTTTTTTTCCTTGGACAGACATTTATTGAGCTCCCGTTTAGTGGCAGGCACTGTGCTAG
GTGCTGGCGATTCAGCAGTGGGCCCAGCCCAGGCCCTGGCCCTCACTCATCTTACTTTCT
AGATGCAAACAGATACCATCAGAACCCCTCTTTCGCGGTGTAGGGGCTGGGCTCGAGTAC
CGGACAGGAAAGGAGTGCTTGGGGCTGGGGCAGGTGAGGATACTACCAACTAAGGCCTAT
CTCCCCCGGGGGCCTCCGCCCCTCCAAGTCAGCTGGGGGAGGCTGGAGGATGGGTCATTC
AGGGCTCTACCCACACGCTGCTGTTGGTCACTCGGGCCCCGAACCAGCCCTTCCAGTAGA
CGCGGTCCTGTCCCCCATGCTCGAAGCGAACGAAGCGGACGCCAGGCCCGTAGTCGGTGA
AGGTGTGGGAGATCTCAATCCACCCGTCGTCGTTGTCCTGCGGCACTACCACCTGCCCGC
TGTTGAACTCGGCCAGTACGTCCTCGTGCTCCGACAGCAGCTTCACCGTGAGCTCGTACA
GGCAGCCGGCGTCTCTGCGGCCAGAGTACCAGTCCTTCACCACGATGGCCGGCTGAGTGG
TGTCCAGCAGCTCCTCCCAGTAGCCCTCAGCCTGCAGGTCAACGACCTGCGCTTTGCGAC
ACCACTCAAAGGAGGAGGCAAAGTACTTCTTGACGCTCTCATCATGGATGAATTCCAGAC
CAGAGTCTCCAGGCAGCTCCTCCACCCTCCAGCCGTCGCCACCGTGCTCCACATCGCTCC
AGCCCTCCAAGTCCTCTTCCCCGCATGGGTTGCGCAGCAGGTTGCGCCTCCTCTTGCTCA
GGAAGTAGAACTGCTGCCAGTGGTCGCGCTCGTCCTCGGTGCCGCCCTCGGGCACCAGCC
CCTCCTGCTGGCACTTGAGCAGCCACAGGGGGGCGCCGTCCACCAGCTCCTTCCAGCGCA
GGCACACCAGGCGGCAGGCCTGCACCAGCTGGGCCGCCGGCAGCTCGGCCAGCACGCGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTCCTTGGACAGACATTTATTGAGCTCCCGTTTAGTGGCAGGCACTGTGCTAG
GTGCTGGCGATTCAGCAGTGGGCCCAGCCCAGGCCCTGGCCCTCACTCATCTTACTTTCT
AGATGCAAACAGATACCATCAGAACCCCTCTTTCGCGGTGTAGGGGCTGGGCTCGAGTAC
CGGACAGGAAAGGAGTGCTTGGGGCTGGGGCAGGTGAGGATACTACCAACTAAGGCCTAT
CTCCCCCGGGGGCCTCCGCCCCTCCAAGTCAGCTGGGGGAGGCTGGAGGATGGGTCATTC
AGGGCTCTACCCACACGCTGCTGTTGGTCACTCGGGCCCCGAACCAGCCCTTCCAGTAGA
CGCGGTCCTGTCCCCCATGCTCGAAGCGAACGAAGCGGACGCCAGGCCCGTAGTCGGTGA
AGGTGTGGGAGATCTCAATCCACCCGTCGTCGTTGTCCTGCGGCACTACCACCTGCCCGC
TGTTGAACTCGGCCAGTACGTCCTCGTGCTCCGACAGCAGCTTCACCGTGAGCTCGTACA
GGCAGCCGGCGTCTCTGCGGCCAGAGTACCAGTCCTTCACCACGATGGCCGGCTGAGTGG
TGTCCAGCAGCTCCTCCCAGTAGCCCTCAGCCTGCAGGTCAACGACCTGCGCTTTGCGAC
ACCACTCAAAGGAGGAGGCAAAGTACTTCTTGACGCTCTCATCATGGATGAATTCCAGAC
CAGAGTCTCCAGGCAGCTCCTCCACCCTCCAGCCGTCGCCACCGTGCTCCACATCGCTCC
AGCCCTCCAAGTCCTCTTCCCCGCATGGGTTGCGCAGCAGGTTGCGCCTCCTCTTGCTCA
GGAAGTAGAACTGCTGCCAGTGGTCGCGCTCGTCCTCGGTGCCGCCCTCGGGCACCAGCC
CCTCCTGCTGGCACTTGAGCAGCCACAGGGGGGCGCCGTCCACCAGCTCCTTCCAGCGCA
GGCACACCAGGCGGCAGGCCTGCACCAGCTGGGCCGCCGGCAGCTCGGCCAGCACGCGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6164731|gb|AAF04515.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6164731|gb|AAF04515.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               225-339, + strand, RNAz p=0.5344

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-339, + strand, RNAz p=0.5344

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               19-435, gnl|bosTau2|chr16 (21674762-21674345)
               

               
               19-435, gnl|Hg17|chr1 (11642724-11643153)
               

               
               19-435, gnl|Mm7|chr4 (147155940-147155505)
               


               
               796-1020, gnl|bosTau2|chr16 (21672809-21672585)
               

               
               796-1020, gnl|Hg17|chr1 (11644789-11645013)
               

               
               796-1020, gnl|Mm7|chr4 (147153997-147153773)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-435, gnl|bosTau2|chr16 (21674762-21674345)
               

               
               19-435, gnl|Hg17|chr1 (11642724-11643153)
               

               
               19-435, gnl|Mm7|chr4 (147155940-147155505)
               


               
               796-1020, gnl|bosTau2|chr16 (21672809-21672585)
               

               
               796-1020, gnl|Hg17|chr1 (11644789-11645013)
               

               
               796-1020, gnl|Mm7|chr4 (147153997-147153773)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.350693)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               jej (0.0989218)

	19-435, gnl\|bosTau2\|chr16 (21674762-21674345)
	19-435, gnl\|Hg17\|chr1 (11642724-11643153)
	19-435, gnl\|Mm7\|chr4 (147155940-147155505)

	796-1020, gnl\|bosTau2\|chr16 (21672809-21672585)
	796-1020, gnl\|Hg17\|chr1 (11644789-11645013)
	796-1020, gnl\|Mm7\|chr4 (147153997-147153773)