Ss1.1-rjej06b_e17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACGCGCCGCGCTTCCCCGCCTCGGCCGCAGCTGCCGCCGCCGCTGCCGCAGCCCTGCA GCGGGGCCTGGTATTGGGCCCTTCGGACTTCGCGCAGTACCAGAGCCAGATCGCTGCGCT GCTGCAAACCAAGGCCCCCCTGGCGGCCACGGCCAGGAGGTGCCGCCGCTGCCGCTGCCC CAACTGCCAAGCGGCGGGCGGCGCCCCCGAGGCAGAGCCGGGCAAGAAGAAACAGCACGT GTGCCACGTGCCAGGCTGTGGCAAGGTGTACGGCAAAACGTCGCACCTGAAGGCGCACCT GCGCTGGCACACGGGCGAGAGGCCCTTCGTGTGCAATTGGCTCTTTTGCGGCAAGAGCTT CACTCGCTCAGACGAGCTACAGCGGCACCTGCGGACTCACACCGGTGAGAAGCGCTTCGC GTGTCCGGAGTGCGGCAAGCGCTTCATGCGCAGCGACCACCTTGCCAAGCATGTCAAGAC GCACCAGAATAAGAAGCTCAAAGTTGCTGAGGCCGGAGTCAAGCGTGAAGACCCGCGGGA CCTGTAAGCCCACCTGGGGGTGGCTCAAGGCCTCTCCCACTTCGGACTCCTTACTCAGCA CCTCTTCCGGGAGGTTCCAGGGACCTGCCGGCAGGAGAGACCCAAGAGAGGCCTTTGCTT CTGCCTGCTTGCCCTCCTCCCAAAGCGATGCCAGGCCTCTAGCTTCTCTGGTCCGGCCTG CGGACAGGGACCCTGTGCCCAGGAAGAGCAGGGGAGGTAGGATTGAGAGCTCTGCATCAG GAAAGAGTGGTTCCAGGCTCTGAACCATTCCCACCGTCTGGGAGACCTGCAGTTTGAGGG GACCACCCTGGGCTGACCTTTGTATATAGGGAGCTCCGCTGAATCAAAGCGGAAGGACCT TGAGAGATTTGAAATAGTGCTCGGGTTTTTTGCTAGGACTGGGCCGGGCTTTGTACAGGT TATTTAATAGCTTTCTTAAAGAATAATTATAATAATTATAACATTAATTAAAATGGTACT TTTGTCCTCCATGCAGAGCTACAGCATGAAATGTCTCTGTAAAGCCATCAGCAGTTTCAG CGTGAAAATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACGCGCCGCGCTTCCCCGCCTCGGCCGCAGCTGCCGCCGCCGCTGCCGCAGCCCTGCA GCGGGGCCTGGTATTGGGCCCTTCGGACTTCGCGCAGTACCAGAGCCAGATCGCTGCGCT GCTGCAAACCAAGGCCCCCCTGGCGGCCACGGCCAGGAGGTGCCGCCGCTGCCGCTGCCC CAACTGCCAAGCGGCGGGCGGCGCCCCCGAGGCAGAGCCGGGCAAGAAGAAACAGCACGT GTGCCACGTGCCAGGCTGTGGCAAGGTGTACGGCAAAACGTCGCACCTGAAGGCGCACCT GCGCTGGCACACGGGCGAGAGGCCCTTCGTGTGCAATTGGCTCTTTTGCGGCAAGAGCTT CACTCGCTCAGACGAGCTACAGCGGCACCTGCGGACTCACACCGGTGAGAAGCGCTTCGC GTGTCCGGAGTGCGGCAAGCGCTTCATGCGCAGCGACCACCTTGCCAAGCATGTCAAGAC GCACCAGAATAAGAAGCTCAAAGTTGCTGAGGCCGGAGTCAAGCGTGAAGACCCGCGGGA CCTGTAAGCCCACCTGGGGGTGGCTCAAGGCCTCTCCCACTTCGGACTCCTTACTCAGCA CCTCTTCCGGGAGGTTCCAGGGACCTGCCGGCAGGAGAGACCCAAGAGAGGCCTTTGCTT CTGCCTGCTTGCCCTCCTCCCAAAGCGATGCCAGGCCTCTAGCTTCTCTGGTCCGGCCTG CGGACAGGGACCCTGTGCCCAGGAAGAGCAGGGGAGGTAGGATTGAGAGCTCTGCATCAG GAAAGAGTGGTTCCAGGCTCTGAACCATTCCCACCGTCTGGGAGACCTGCAGTTTGAGGG GACCACCCTGGGCTGACCTTTGTATATAGGGAGCTCCGCTGAATCAAAGCGGAAGGACCT TGAGAGATTTGAAATAGTGCTCGGGTTTTTTGCTAGGACTGGGCCGGGCTTTGTACAGGT TATTTAATAGCTTTCTTAAAGAATAATTATAATAATTATAACATTAATTAAAATGGTACT TTTGTCCTCCATGCAGAGCTACAGCATGAAATGTCTCTGTAAAGCCATCAGCAGTTTCAG CGTGAAAATAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 200-617, - strand, RNAz p=0.999836 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 200-617, - strand, RNAz p=0.999836 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-617, gnl|bosTau2|chr2 (16555650-16555034) | |
| 1-617, gnl|Hg17|chr2 (171398875-171399468) | |
| 170-487, gnl|bosTau2|chr19 (30674752-30675081) | |
| 170-487, gnl|Hg17|chr17 (43280113-43279784) | |
| 170-487, gnl|Mm7|chr11 (97131183-97131512) | |
| 305-471, gnl|bosTau2|chr11 (66289976-66290142) | |
| 305-471, gnl|canFam2|chr17 (10020291-10020464) | |
| 305-471, gnl|danRer3|chr17 (24945970-24945795) | |
| 305-471, gnl|dasNov1|scaffold_34569 (9956-10129) | |
| 305-471, gnl|echTel1|scaffold_209413 (2055-2227) | |
| 305-471, gnl|fr1|chrUn (134319455-134319278) | |
| 305-471, gnl|galGal2|chr3 (94753626-94753799) | |
| 305-471, gnl|hg17|chr2 (10142938-10143111) | |
| 305-471, gnl|Hg17|chr2 (10142942-10143108) | |
| 305-471, gnl|loxAfr1|scaffold_24452 (36628-36800) | |
| 305-471, gnl|mm7|chr12 (22496674-22496841) | |
| 305-471, gnl|Mm7|chr12 (22496674-22496838) | |
| 305-471, gnl|monDom2|scaffold_1 (128163182-128163366) | |
| 305-471, gnl|oryCun1|scaffold_195253 (5946-6111) | |
| 305-471, gnl|panTro1|chr12 (10829096-10829269) | |
| 305-471, gnl|rheMac2|chr13 (10154300-10154473) | |
| 305-471, gnl|rn3|chr6 (42308538-42308704) | |
| 305-471, gnl|tetNig1|chr10 (5862337-5862177) | |
| 305-471, gnl|xenTro1|scaffold_469 (259860-260033) | |
| 627-1092, gnl|bosTau2|chr2 (16555003-16554549) | |
| 627-1092, gnl|Hg17|chr2 (171399484-171399966) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-617, gnl|bosTau2|chr2 (16555650-16555034) | |
| 1-617, gnl|Hg17|chr2 (171398875-171399468) | |
| 170-487, gnl|bosTau2|chr19 (30674752-30675081) | |
| 170-487, gnl|Hg17|chr17 (43280113-43279784) | |
| 170-487, gnl|Mm7|chr11 (97131183-97131512) | |
| 305-471, gnl|bosTau2|chr11 (66289976-66290142) | |
| 305-471, gnl|canFam2|chr17 (10020291-10020464) | |
| 305-471, gnl|danRer3|chr17 (24945970-24945795) | |
| 305-471, gnl|dasNov1|scaffold_34569 (9956-10129) | |
| 305-471, gnl|echTel1|scaffold_209413 (2055-2227) | |
| 305-471, gnl|fr1|chrUn (134319455-134319278) | |
| 305-471, gnl|galGal2|chr3 (94753626-94753799) | |
| 305-471, gnl|hg17|chr2 (10142938-10143111) | |
| 305-471, gnl|Hg17|chr2 (10142942-10143108) | |
| 305-471, gnl|loxAfr1|scaffold_24452 (36628-36800) | |
| 305-471, gnl|mm7|chr12 (22496674-22496841) | |
| 305-471, gnl|Mm7|chr12 (22496674-22496838) | |
| 305-471, gnl|monDom2|scaffold_1 (128163182-128163366) | |
| 305-471, gnl|oryCun1|scaffold_195253 (5946-6111) | |
| 305-471, gnl|panTro1|chr12 (10829096-10829269) | |
| 305-471, gnl|rheMac2|chr13 (10154300-10154473) | |
| 305-471, gnl|rn3|chr6 (42308538-42308704) | |
| 305-471, gnl|tetNig1|chr10 (5862337-5862177) | |
| 305-471, gnl|xenTro1|scaffold_469 (259860-260033) | |
| 627-1092, gnl|bosTau2|chr2 (16555003-16554549) | |
| 627-1092, gnl|Hg17|chr2 (171399484-171399966) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nco (0.161734) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| eep (0.122564) | |
| clu (0.119646) | |
| jej (0.0989218) |