Ss1.1-rjej06b_i20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGCGGCCATCCTGGAAATCCTCAACGCCTGGGAGAACGGGGTCCTGGCCTTCGAGTCC ATCCAGAAAATCACAGATAACATCAAGGGGAAAGTGTGCAGTCTGGCCGTGTGTGCTGTG GCTTGGCTCGTGGCCCACGTGCGGATGCTGGGCCTGGACGAGCGTGAGAAGTCTCTGCAG ATGATCCGCCAGCTGGCAGGGCCGCTGAACAGCGAGAACACCCTGCAGTTCTACAACGAG CGGGTGGTGATCATGAGCTCCATCCTGGAGCACATGTGTGCGGACGTGCTGCAGCAGACC GCCACGCAGATCAAGTTCCCGGCCATGGGCATGGACAGCATGCCCTACTGGAACCTGCTG CCCCCCAAGCGACCCATCAAGGAGGTGCTGACGGACGTGTTTGCCAAGGTGCTGGAGAGG GGCTGGGTGGACAGCCGCTCCATCCACGTCTTTGACACCCTGCTGCACATGGGAGGCGTC TACTGGTTCTGCAACAACCTGATTAAGGAGCTGTTGAAGGAGACGCGGAAGGAGCACACG CTGCGGGCGGTGGAGCTGCTCTACTCCATCTTCTGTCTGGACATGCAGCAGGTGACCCTG GTCCTGCTGGGCCACATCCTGCCTGGCCTGCTCACCGACTCCTCCAAGTGGCACAGCCTC ATGGACCCCCCTGGCACCGCACTCGCCAAGCTGGCTGTCTGGTGTGCCCTGAGTTCCTAC TCCTCCCACAAGGGGCAGGCGTCCTCCCGCCAAAAGAAGAGGCACCGGGAAGACATCGAG GATTACATCAGCCTCTTCCCCCTGGACGACATGCAGCCCTCGAAGCTGATGCGACTGCTG AGCTCCAATGAGGATGATGCCAACATCCTTTCGAGTCCCACCGACCGCTCCATGAGCAGC TCCCTGTCGGCCTCCCAGCTCCACACAGTTAACATGAGGGACCCGCTGAACCGAGTCCTG GCCAACCTGTTCCTGCTCATCTCCTCCATCCTGGGCTCGCGGACCGCCGGCCCCCACACG CAGTTCGTGCAGTGGTTCATGGAGGAGTGTGTGGACTGCCTGGAGCAGGGCAGCCGCGGC AGCATCCTGCAGTTCATGCCCTTCACCACCGTGTCGGAGCTGGTGAAGGTGTCGGCCATG TCCAGCCCCAGGGTGGTTCTGGCCATCACGGACCTCAGCCTGCCCCTGGGCCGCCAGGTG GCTGCCAAAGCCATTGCCGCCCTCTGAGGGGCTTAGAGTGGCCGCAGGGGGCTGGTGGCG AGGGTCCCAGCCCCTTCCCTCGGGCGCCTTAGAAGGAAACGTGTGGAGAGATGAGCCATC ATTGCTCATATCCACATGACGTAATAGCCCGCAGTCAGTTTCCAGATCTTTCCCCTGCTC CTGACTTCTGACCTCTAAGACAGCTCCCAGTTTCTTTCATAATTTCCTCTCCCCACTGTG AGCAGCATGTGAGCAGCTGGTTCCTCAGCTCAGAGCAGCCTCGCTGTGCCCACTGCCCCC CGCAGCCTCCCACGCAGGAGTAGGTTCGCTACCTCTGGGGAGTTTGATAGCTGCAGGCTG TGTGTGTATATATGTGTTTTTTTCTTTTTTTACGTGAGGAGTGTTCACCTCAGCTCACTT TGTAAATAAAGATCCTCATCGGTCAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGCGGCCATCCTGGAAATCCTCAACGCCTGGGAGAACGGGGTCCTGGCCTTCGAGTCC ATCCAGAAAATCACAGATAACATCAAGGGGAAAGTGTGCAGTCTGGCCGTGTGTGCTGTG GCTTGGCTCGTGGCCCACGTGCGGATGCTGGGCCTGGACGAGCGTGAGAAGTCTCTGCAG ATGATCCGCCAGCTGGCAGGGCCGCTGAACAGCGAGAACACCCTGCAGTTCTACAACGAG CGGGTGGTGATCATGAGCTCCATCCTGGAGCACATGTGTGCGGACGTGCTGCAGCAGACC GCCACGCAGATCAAGTTCCCGGCCATGGGCATGGACAGCATGCCCTACTGGAACCTGCTG CCCCCCAAGCGACCCATCAAGGAGGTGCTGACGGACGTGTTTGCCAAGGTGCTGGAGAGG GGCTGGGTGGACAGCCGCTCCATCCACGTCTTTGACACCCTGCTGCACATGGGAGGCGTC TACTGGTTCTGCAACAACCTGATTAAGGAGCTGTTGAAGGAGACGCGGAAGGAGCACACG CTGCGGGCGGTGGAGCTGCTCTACTCCATCTTCTGTCTGGACATGCAGCAGGTGACCCTG GTCCTGCTGGGCCACATCCTGCCTGGCCTGCTCACCGACTCCTCCAAGTGGCACAGCCTC ATGGACCCCCCTGGCACCGCACTCGCCAAGCTGGCTGTCTGGTGTGCCCTGAGTTCCTAC TCCTCCCACAAGGGGCAGGCGTCCTCCCGCCAAAAGAAGAGGCACCGGGAAGACATCGAG GATTACATCAGCCTCTTCCCCCTGGACGACATGCAGCCCTCGAAGCTGATGCGACTGCTG AGCTCCAATGAGGATGATGCCAACATCCTTTCGAGTCCCACCGACCGCTCCATGAGCAGC TCCCTGTCGGCCTCCCAGCTCCACACAGTTAACATGAGGGACCCGCTGAACCGAGTCCTG GCCAACCTGTTCCTGCTCATCTCCTCCATCCTGGGCTCGCGGACCGCCGGCCCCCACACG CAGTTCGTGCAGTGGTTCATGGAGGAGTGTGTGGACTGCCTGGAGCAGGGCAGCCGCGGC AGCATCCTGCAGTTCATGCCCTTCACCACCGTGTCGGAGCTGGTGAAGGTGTCGGCCATG TCCAGCCCCAGGGTGGTTCTGGCCATCACGGACCTCAGCCTGCCCCTGGGCCGCCAGGTG GCTGCCAAAGCCATTGCCGCCCTCTGAGGGGCTTAGAGTGGCCGCAGGGGGCTGGTGGCG AGGGTCCCAGCCCCTTCCCTCGGGCGCCTTAGAAGGAAACGTGTGGAGAGATGAGCCATC ATTGCTCATATCCACATGACGTAATAGCCCGCAGTCAGTTTCCAGATCTTTCCCCTGCTC CTGACTTCTGACCTCTAAGACAGCTCCCAGTTTCTTTCATAATTTCCTCTCCCCACTGTG AGCAGCATGTGAGCAGCTGGTTCCTCAGCTCAGAGCAGCCTCGCTGTGCCCACTGCCCCC CGCAGCCTCCCACGCAGGAGTAGGTTCGCTACCTCTGGGGAGTTTGATAGCTGCAGGCTG TGTGTGTATATATGTGTTTTTTTCTTTTTTTACGTGAGGAGTGTTCACCTCAGCTCACTT TGTAAATAAAGATCCTCATCGGTCAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 242-1420, + strand, RNAz p=0.975413 | |
| 280-508, + strand, RNAz p=0.759724 | |
| 779-880, + strand, RNAz p=0.900548 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 242-1420, + strand, RNAz p=0.975413 | |
| 280-508, + strand, RNAz p=0.759724 | |
| 779-880, + strand, RNAz p=0.900548 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 242-508, gnl|bosTau2|chr19 (34562799-34563065) | |
| 242-508, gnl|canFam2|chr9 (25852394-25852087) | |
| 242-508, gnl|danRer3|chr23 (14813353-14813044) | |
| 242-508, gnl|echTel1|scaffold_322583 (42471-42774) | |
| 242-508, gnl|fr1|chrUn (145548544-145548254) | |
| 242-508, gnl|galGal2|chrUn (131899160-131899459) | |
| 242-508, gnl|hg17|chr17 (35432908-35433216) | |
| 242-508, gnl|Hg17|chr17 (35433175-35432909) | |
| 242-508, gnl|loxAfr1|scaffold_22587 (32284-32588) | |
| 242-508, gnl|mm7|chr11 (98816574-98816852) | |
| 242-508, gnl|Mm7|chr11 (98816841-98816575) | |
| 242-508, gnl|monDom2|scaffold_18 (49266674-49266968) | |
| 242-508, gnl|oryCun1|scaffold_210513 (40354-40053) | |
| 242-508, gnl|panTro1|chr19 (38671474-38671782) | |
| 242-508, gnl|rheMac2|chr16 (50122036-50122344) | |
| 242-508, gnl|rn3|chr10 (87494846-87495124) | |
| 242-508, gnl|tetNig1|chr2 (4498526-4498817) | |
| 242-508, gnl|xenTro1|scaffold_343 (20761-20472) | |
| 779-880, gnl|bosTau2|chr19 (34564052-34564153) | |
| 779-880, gnl|canFam2|chr9 (25853600-25853476) | |
| 779-880, gnl|dasNov1|scaffold_77541 (6370-6246) | |
| 779-880, gnl|echTel1|scaffold_314453 (2163-2063) | |
| 779-880, gnl|fr1|chrUn (145549338-145549231) | |
| 779-880, gnl|galGal2|chrUn (131898108-131898232) | |
| 779-880, gnl|hg17|chr17 (35431719-35431843) | |
| 779-880, gnl|Hg17|chr17 (35431835-35431734) | |
| 779-880, gnl|mm7|chr11 (98815404-98815527) | |
| 779-880, gnl|Mm7|chr11 (98815519-98815418) | |
| 779-880, gnl|monDom2|scaffold_18 (49262322-49262446) | |
| 779-880, gnl|oryCun1|scaffold_210513 (41462-41341) | |
| 779-880, gnl|panTro1|chr19 (38670285-38670409) | |
| 779-880, gnl|rheMac2|chr16 (50120868-50120992) | |
| 779-880, gnl|rn3|chr10 (87493461-87493583) | |
| 779-880, gnl|tetNig1|chr2 (4497724-4497838) | |
| 779-880, gnl|xenTro1|scaffold_343 (22277-22158) | |
| 1111-1644, gnl|bosTau2|chr19 (34565716-34566264) | |
| 1111-1644, gnl|Hg17|chr17 (35429424-35428885) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 242-508, gnl|bosTau2|chr19 (34562799-34563065) | |
| 242-508, gnl|canFam2|chr9 (25852394-25852087) | |
| 242-508, gnl|danRer3|chr23 (14813353-14813044) | |
| 242-508, gnl|echTel1|scaffold_322583 (42471-42774) | |
| 242-508, gnl|fr1|chrUn (145548544-145548254) | |
| 242-508, gnl|galGal2|chrUn (131899160-131899459) | |
| 242-508, gnl|hg17|chr17 (35432908-35433216) | |
| 242-508, gnl|Hg17|chr17 (35433175-35432909) | |
| 242-508, gnl|loxAfr1|scaffold_22587 (32284-32588) | |
| 242-508, gnl|mm7|chr11 (98816574-98816852) | |
| 242-508, gnl|Mm7|chr11 (98816841-98816575) | |
| 242-508, gnl|monDom2|scaffold_18 (49266674-49266968) | |
| 242-508, gnl|oryCun1|scaffold_210513 (40354-40053) | |
| 242-508, gnl|panTro1|chr19 (38671474-38671782) | |
| 242-508, gnl|rheMac2|chr16 (50122036-50122344) | |
| 242-508, gnl|rn3|chr10 (87494846-87495124) | |
| 242-508, gnl|tetNig1|chr2 (4498526-4498817) | |
| 242-508, gnl|xenTro1|scaffold_343 (20761-20472) | |
| 779-880, gnl|bosTau2|chr19 (34564052-34564153) | |
| 779-880, gnl|canFam2|chr9 (25853600-25853476) | |
| 779-880, gnl|dasNov1|scaffold_77541 (6370-6246) | |
| 779-880, gnl|echTel1|scaffold_314453 (2163-2063) | |
| 779-880, gnl|fr1|chrUn (145549338-145549231) | |
| 779-880, gnl|galGal2|chrUn (131898108-131898232) | |
| 779-880, gnl|hg17|chr17 (35431719-35431843) | |
| 779-880, gnl|Hg17|chr17 (35431835-35431734) | |
| 779-880, gnl|mm7|chr11 (98815404-98815527) | |
| 779-880, gnl|Mm7|chr11 (98815519-98815418) | |
| 779-880, gnl|monDom2|scaffold_18 (49262322-49262446) | |
| 779-880, gnl|oryCun1|scaffold_210513 (41462-41341) | |
| 779-880, gnl|panTro1|chr19 (38670285-38670409) | |
| 779-880, gnl|rheMac2|chr16 (50120868-50120992) | |
| 779-880, gnl|rn3|chr10 (87493461-87493583) | |
| 779-880, gnl|tetNig1|chr2 (4497724-4497838) | |
| 779-880, gnl|xenTro1|scaffold_343 (22277-22158) | |
| 1111-1644, gnl|bosTau2|chr19 (34565716-34566264) | |
| 1111-1644, gnl|Hg17|chr17 (35429424-35428885) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nep (0.183925) | |
| fhi (0.169578) | |
| pty (0.142714) | |
| pla (0.133672) | |
| cov (0.132153) | |
| eru (0.120048) | |
| nbm (0.0993246) | |
| jej (0.0989218) |