Non-Coding RNA Search

Ss1.1-rjej07b_p24.5

Sequence:


               
               CCGGGGGCCGGGAGAGCGGAGGCCGCGATGATTCTTCGGACAGAGGCCCGGGCCTGCGAT
GGACCGCCCGCCCGCTCCTGCAGCCTGGGCTGACGTCAGGGTCAAGGCCACGAACTGCGT
GCGGACCCCTGGGCCCGGGCCTCCGGATGGGGCCTGGGGGCCTCGCGTTCATCAAGACAC
CCCTCTGCCCACCTCGCCAGATCTTCATCACCAGCAAATGCCAGGACCTGGCTCCCCCAT
CCTCAGAACTCGCAAGCCATTGTCCCCCTGTTGGGGAACCCCCCCCTGCCTTGGTTGGTG
ACAGAGGGGTGGGCCAGGGGTGGGGGCTTCCCCCTGTACATACTCTGCCATACCAACCCC
CAGGTATTAATTCTCGCTGGTTTTGTTTTTATTTTAATTTTTTTTTTTTTGGTTTTGATT
TTTTTAATAAGAATTTTCATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGGGCCGGGAGAGCGGAGGCCGCGATGATTCTTCGGACAGAGGCCCGGGCCTGCGAT
GGACCGCCCGCCCGCTCCTGCAGCCTGGGCTGACGTCAGGGTCAAGGCCACGAACTGCGT
GCGGACCCCTGGGCCCGGGCCTCCGGATGGGGCCTGGGGGCCTCGCGTTCATCAAGACAC
CCCTCTGCCCACCTCGCCAGATCTTCATCACCAGCAAATGCCAGGACCTGGCTCCCCCAT
CCTCAGAACTCGCAAGCCATTGTCCCCCTGTTGGGGAACCCCCCCCTGCCTTGGTTGGTG
ACAGAGGGGTGGGCCAGGGGTGGGGGCTTCCCCCTGTACATACTCTGCCATACCAACCCC
CAGGTATTAATTCTCGCTGGTTTTGTTTTTATTTTAATTTTTTTTTTTTTGGTTTTGATT
TTTTTAATAAGAATTTTCATTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-391, - strand, RNAz p=0.833637

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-391, - strand, RNAz p=0.833637

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-444, gnl|bosTau2|chr19 (34307282-34306846)
               

               
               1-444, gnl|Hg17|chr17 (35766131-35766568)
               

               
               1-444, gnl|Mm7|chr11 (99082795-99083195)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr19 (34307282-34306846)
               

               
               1-444, gnl|Hg17|chr17 (35766131-35766568)
               

               
               1-444, gnl|Mm7|chr11 (99082795-99083195)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               jej (0.0989218)

	1-444, gnl\|bosTau2\|chr19 (34307282-34306846)
	1-444, gnl\|Hg17\|chr17 (35766131-35766568)
	1-444, gnl\|Mm7\|chr11 (99082795-99083195)