Non-Coding RNA Search

Ss1.1-rjej08b_f8.5.5

Sequence:


               
               CCTACCGCTGGAGCGTGAGGGAGAACACGAATTCCGTTTGGAGGTTTCTTTGAGTTCGCG
GAGTAGGCATCATGAGCAAAGCTCACCCGCCGGAGTTGAAGAAATTTATGGACAAGAAAT
TATCATTGAAATTAAATGGTGGCAGACATGTCCAAGGAATATTGCGAGGATTTGACCCCT
TTATGAACCTTGTGATAGATGAATGTGTGGAGATGGCAACAAGTGGTCAACAGAACAATA
TTGGAATGGTGGTAATACGAGGAAACAGTATCATCATGTTAGAAGCCTTGGAACGAGTAT
GAACAGTGGCTCTGCTCACCAGAGAAATCAACTGCTTCCACATTCTCCCCTCTCTCCGGC
ATTTGTTGCAATGAAAGCCAAGTCTTATACATTTTCTTACTGAATTTTTTTGTTAAATAA
ACTTTTGTAATAATCAAAAAAAAATTCTTACATGTTCTGAACATGGAAAATAGCTCTTAT
TCTGACTTTTTCTATCACGACCTGTTCCTGGTCGAGACTGATTTGTTCAAAGGTTTTTAT
GCATTAAAATAGAAGAATCTGGAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTACCGCTGGAGCGTGAGGGAGAACACGAATTCCGTTTGGAGGTTTCTTTGAGTTCGCG
GAGTAGGCATCATGAGCAAAGCTCACCCGCCGGAGTTGAAGAAATTTATGGACAAGAAAT
TATCATTGAAATTAAATGGTGGCAGACATGTCCAAGGAATATTGCGAGGATTTGACCCCT
TTATGAACCTTGTGATAGATGAATGTGTGGAGATGGCAACAAGTGGTCAACAGAACAATA
TTGGAATGGTGGTAATACGAGGAAACAGTATCATCATGTTAGAAGCCTTGGAACGAGTAT
GAACAGTGGCTCTGCTCACCAGAGAAATCAACTGCTTCCACATTCTCCCCTCTCTCCGGC
ATTTGTTGCAATGAAAGCCAAGTCTTATACATTTTCTTACTGAATTTTTTTGTTAAATAA
ACTTTTGTAATAATCAAAAAAAAATTCTTACATGTTCTGAACATGGAAAATAGCTCTTAT
TCTGACTTTTTCTATCACGACCTGTTCCTGGTCGAGACTGATTTGTTCAAAGGTTTTTAT
GCATTAAAATAGAAGAATCTGGAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13385994|ref|NP_080782.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13385994|ref|NP_080782.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               17-190, gnl|bosTau2|chr23 (38796483-38796310)
               

               
               17-190, gnl|Hg17|chr18 (50187537-50187364)
               


               
               251-560, gnl|bosTau2|chr11 (49578442-49578139)
               

               
               251-560, gnl|Hg17|chr2 (70420468-70420170)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-190, gnl|bosTau2|chr23 (38796483-38796310)
               

               
               17-190, gnl|Hg17|chr18 (50187537-50187364)
               


               
               251-560, gnl|bosTau2|chr11 (49578442-49578139)
               

               
               251-560, gnl|Hg17|chr2 (70420468-70420170)

Expressed library(ies): 37 entry(ies)

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Expressed library(ies): 37 entry(ies)

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               fty (0.703359)
               

               
               rec (0.519211)
               

               
               thg (0.507164)
               

               
               bfe (0.449573)
               

               
               elu (0.385356)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.703359)
               

               
               rec (0.519211)
               

               
               thg (0.507164)
               

               
               bfe (0.449573)
               

               
               elu (0.385356)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	17-190, gnl\|bosTau2\|chr23 (38796483-38796310)
	17-190, gnl\|Hg17\|chr18 (50187537-50187364)

	251-560, gnl\|bosTau2\|chr11 (49578442-49578139)
	251-560, gnl\|Hg17\|chr2 (70420468-70420170)

	fty (0.703359)
	rec (0.519211)
	thg (0.507164)
	bfe (0.449573)
	elu (0.385356)
	fhi (0.339155)
	mga (0.32041)
	cte (0.29274)
	csk (0.281492)
	nca (0.273748)
	fce (0.271592)
	ebs (0.236602)
	ece (0.229305)
	fli (0.202881)
	jej (0.197844)
	eje (0.197668)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	sto (0.179824)
	ill (0.175593)
	sin (0.174948)
	mcp (0.170648)
	eye (0.170503)
	cki (0.165235)
	eli (0.151814)
	cag (0.151194)
	cst (0.140036)
	lyg (0.133103)
	ova (0.129132)
	ese (0.126502)
	clu (0.119646)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)
	ldo (0.0970026)