Non-Coding RNA Search

Ss1.1-rjej08b_j2.5

Sequence:


               
               AAACCCAAAGCCAATGGCAACCCCAGCCCGCAACTCTGAGGGCCCTGCTCACCTCCTGAG
CTAGGAGAGGGCAGGAGTCTTCTCAGTCCCTTCCCCACACCCCCCTCAATTCCCCTTCCT
GGATTCCCAACAGCCTGGACCGGGGAAGTCCTCCGGATTCCAGGAAAGCCTGTCCACCCT
GGGCCGTGGGGCCGGTTGGAAGGGTATTTGCAGCGGGAAGCATGTGAGAGGTGGATGCCT
GCCCGTTGCTGAGGACACAGGAGAGGGCTCGGGGGGCTGGGAGCAAGAGGAGGCTCTGTC
CTGGCATGCGTGGGTGTCCCTCGGACCCGCTGGCCTGCTGTTGACACCGGCCCCTCAGAG
GAGTCCCAGGGTGCTCAGCTCCTCAGCTGATCCTTCGTCCCTTATTTATTCTCTTTTCTA
TTTATATGTGTGGTCCAGGACCCTCAGTGAACAGATAAGCGAGGGCATCTCTCCCAGGTG
ACCCTTCTTTCCTGTCCCAGGAGGGTAGGCAGTTCCCTTTGGGATGGGACTCCCACACCT
CCCTCAGGTCCCCACTCCGACCAGCACCAGTGTCTGCCTCTACGGACACTGGCAGCTCCT
AGAAAGCCGGGCCGGTGCCCGGGATGGGGGGCAGGTACTCCCCACCGCCCTGCCTCCCCT
TCTGCTCCTCATCCCTCCCTCCCCCTTTATTACCGTTTTTGTACTTGATGCCTTCTCTGT
GAGCAGTGGCTCTGTTTGAAGGAGGGAGCCAGGAGCCTGGTGGGAAGCCCTCCCCAGAGA
GATGGCTGTAGGGGCTTTATTTTGCAGACTGTGTGATGATAGAGCAAGAGCAGGACTGCA
CCTCTGTATATTGGGAGATGATGATGTCCATTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCCAAAGCCAATGGCAACCCCAGCCCGCAACTCTGAGGGCCCTGCTCACCTCCTGAG
CTAGGAGAGGGCAGGAGTCTTCTCAGTCCCTTCCCCACACCCCCCTCAATTCCCCTTCCT
GGATTCCCAACAGCCTGGACCGGGGAAGTCCTCCGGATTCCAGGAAAGCCTGTCCACCCT
GGGCCGTGGGGCCGGTTGGAAGGGTATTTGCAGCGGGAAGCATGTGAGAGGTGGATGCCT
GCCCGTTGCTGAGGACACAGGAGAGGGCTCGGGGGGCTGGGAGCAAGAGGAGGCTCTGTC
CTGGCATGCGTGGGTGTCCCTCGGACCCGCTGGCCTGCTGTTGACACCGGCCCCTCAGAG
GAGTCCCAGGGTGCTCAGCTCCTCAGCTGATCCTTCGTCCCTTATTTATTCTCTTTTCTA
TTTATATGTGTGGTCCAGGACCCTCAGTGAACAGATAAGCGAGGGCATCTCTCCCAGGTG
ACCCTTCTTTCCTGTCCCAGGAGGGTAGGCAGTTCCCTTTGGGATGGGACTCCCACACCT
CCCTCAGGTCCCCACTCCGACCAGCACCAGTGTCTGCCTCTACGGACACTGGCAGCTCCT
AGAAAGCCGGGCCGGTGCCCGGGATGGGGGGCAGGTACTCCCCACCGCCCTGCCTCCCCT
TCTGCTCCTCATCCCTCCCTCCCCCTTTATTACCGTTTTTGTACTTGATGCCTTCTCTGT
GAGCAGTGGCTCTGTTTGAAGGAGGGAGCCAGGAGCCTGGTGGGAAGCCCTCCCCAGAGA
GATGGCTGTAGGGGCTTTATTTTGCAGACTGTGTGATGATAGAGCAAGAGCAGGACTGCA
CCTCTGTATATTGGGAGATGATGATGTCCATTGCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-199, - strand, RNAz p=0.99918
               

               
               399-833, - strand, RNAz p=0.993933

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.99918
               

               
               399-833, - strand, RNAz p=0.993933

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-876, gnl|bosTau2|chr15 (14304640-14305511)
               

               
               1-876, gnl|Hg17|chr11 (118492138-118492992)
               

               
               1-876, gnl|Mm7|chr9 (44245439-44244610)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-876, gnl|bosTau2|chr15 (14304640-14305511)
               

               
               1-876, gnl|Hg17|chr11 (118492138-118492992)
               

               
               1-876, gnl|Mm7|chr9 (44245439-44244610)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-199, - strand, RNAz p=0.99918
	399-833, - strand, RNAz p=0.993933

	1-876, gnl\|bosTau2\|chr15 (14304640-14305511)
	1-876, gnl\|Hg17\|chr11 (118492138-118492992)
	1-876, gnl\|Mm7\|chr9 (44245439-44244610)

	duo (0.172801)
	eye (0.170503)
	cly (0.120642)
	nbm (0.0993246)
	jej (0.0989218)