Non-Coding RNA Search

Ss1.1-rjej08b_p23.5

Sequence:


               
               CTCGCGAAGCTTCGAGGAACTACAATTCCCAGCGCCCCCCGCGGTGAGGCGGGGTTGAGT
CAGAACCGCACAGTCAGGCCAGGAAACTACAACTCCCAGGAGTTCTGGAGCCGGGCAGCT
GGACTACGGGAAGCGGCAGGCGGAGGCCAGTTATAGGAAACTCCGGGATCAGGTTGTGAA
AGCCCAGGGTTAGGAGCCACAGGCATGCTGCGTCCCAAGGCTTTGACCCAGGTGCTAAGC
CAAGCTAACACTGGAGGTGTCCAGAGCACCCTGCTGCTGAATAACGAGGGATCTCTGTTG
GCCTACTCTGGTTACGGGGATACGGACGCCCGAGTCACTGCAGCCATCGCCAGTAACATC
TGGGCGGCCTACGACCGGAACGGGAACCAAGCATTTAACGAAGACAATCTCAAATTCATC
CTCATGGACTGCATGGAAGGCCGTGTAGCCATCACTCGAGTGGCCAACCTTCTACTGTGC
ATGTATGCCAAGGAGACTGTTGGCTTCGGAATGCTCAAGGCCAAGGCCCAGGCCTTGGTG
CAGTACCTGGAGGAGCCTCTCACCCAAGTAGCAGCATCGTAATGGACATGGGTGGAAGCA
GGGGTCAGAAAAGAGAGATGACCATTTGGAGGGGCAGGGCCCCCTGGTGAAACCTCCCCC
TGGACTTTGGGGGGAGGGTGGGACTTTGTTTTTCCCAAGAATAAACTTCAACTCCTGTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGCGAAGCTTCGAGGAACTACAATTCCCAGCGCCCCCCGCGGTGAGGCGGGGTTGAGT
CAGAACCGCACAGTCAGGCCAGGAAACTACAACTCCCAGGAGTTCTGGAGCCGGGCAGCT
GGACTACGGGAAGCGGCAGGCGGAGGCCAGTTATAGGAAACTCCGGGATCAGGTTGTGAA
AGCCCAGGGTTAGGAGCCACAGGCATGCTGCGTCCCAAGGCTTTGACCCAGGTGCTAAGC
CAAGCTAACACTGGAGGTGTCCAGAGCACCCTGCTGCTGAATAACGAGGGATCTCTGTTG
GCCTACTCTGGTTACGGGGATACGGACGCCCGAGTCACTGCAGCCATCGCCAGTAACATC
TGGGCGGCCTACGACCGGAACGGGAACCAAGCATTTAACGAAGACAATCTCAAATTCATC
CTCATGGACTGCATGGAAGGCCGTGTAGCCATCACTCGAGTGGCCAACCTTCTACTGTGC
ATGTATGCCAAGGAGACTGTTGGCTTCGGAATGCTCAAGGCCAAGGCCCAGGCCTTGGTG
CAGTACCTGGAGGAGCCTCTCACCCAAGTAGCAGCATCGTAATGGACATGGGTGGAAGCA
GGGGTCAGAAAAGAGAGATGACCATTTGGAGGGGCAGGGCCCCCTGGTGAAACCTCCCCC
TGGACTTTGGGGGGAGGGTGGGACTTTGTTTTTCCCAAGAATAAACTTCAACTCCTGTCT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|18848156|gb|AAH24190.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18848156|gb|AAH24190.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-273, gnl|bosTau2|chr3 (10559782-10559511)
               

               
               1-273, gnl|Hg17|chr1 (152837548-152837822)
               

               
               1-273, gnl|Mm7|chr3 (88666869-88666596)
               


               
               524-720, gnl|bosTau2|chr3 (10556759-10556556)
               

               
               524-720, gnl|Hg17|chr1 (152841177-152841370)
               

               
               524-720, gnl|Mm7|chr3 (88663807-88663618)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-273, gnl|bosTau2|chr3 (10559782-10559511)
               

               
               1-273, gnl|Hg17|chr1 (152837548-152837822)
               

               
               1-273, gnl|Mm7|chr3 (88666869-88666596)
               


               
               524-720, gnl|bosTau2|chr3 (10556759-10556556)
               

               
               524-720, gnl|Hg17|chr1 (152841177-152841370)
               

               
               524-720, gnl|Mm7|chr3 (88663807-88663618)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               ton (0.526501)
               

               
               cag (0.453583)
               

               
               lnt (0.426925)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               cly (0.361925)
               

               
               mcp (0.341297)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.526501)
               

               
               cag (0.453583)
               

               
               lnt (0.426925)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               cly (0.361925)
               

               
               mcp (0.341297)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               ece (0.229305)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-273, gnl\|bosTau2\|chr3 (10559782-10559511)
	1-273, gnl\|Hg17\|chr1 (152837548-152837822)
	1-273, gnl\|Mm7\|chr3 (88666869-88666596)

	524-720, gnl\|bosTau2\|chr3 (10556759-10556556)
	524-720, gnl\|Hg17\|chr1 (152841177-152841370)
	524-720, gnl\|Mm7\|chr3 (88663807-88663618)

	ton (0.526501)
	cag (0.453583)
	lnt (0.426925)
	fcc (0.39557)
	nlu (0.383362)
	cly (0.361925)
	mcp (0.341297)
	cli (0.305623)
	cga (0.279096)
	ece (0.229305)
	fli (0.202881)
	nbm (0.198649)
	nep (0.183925)
	ill (0.175593)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	hyp (0.142837)
	cst (0.140036)
	hlv (0.139256)
	cov (0.132153)
	jca (0.11396)
	jej (0.0989218)