Non-Coding RNA Search

Ss1.1-rjej09b_a12.5

Sequence:


               
               GGCCACCGGCACAGAAGCATGCCATTGCCTTTTCTCCCCCACCCGCCCACGTTCATATTT
GTGTTCTGTTTGGGGGCAGTTTTTCTTAATTATTTAAAAGATAGGAAGCAAGGGGTGCCT
AAATCTAGAATCAGGGTCTGCTGCTGGGCCACGGGGGTTCAATCCAGCCAGCAGTGGGGG
GGAGGTCCCCAGCAGGCCGTGAGCAACTTGGGAGTCTGACCGGCAGCCCTCTGGCCCGCC
TTTCCCCCAGCTTTCAGGCAGGCTCTGAAATGCGCCCCGCCCCGTTCTCTGCTGGTCAGC
GGCTGCTGCCCCCTCCCCAGCCCAGCCATCCAGCCACACATTTCTACCTGGCCAGCACAG
ACCGGGGCTCCGGGGTTGGGAGTGGAACCCTCCCCGCCTCAGGGTTCTCCTTACTCCTTT
TTCCTGCCCCACCAAGAGTTCTGCCAGGGGCGGGTTTGACAAAAACAAAAGACCCTACCA
CCTCTACATATTATGGAAAGAAAATATTTTTGTCAATTCTTATTCTTTTATAATTATGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCACCGGCACAGAAGCATGCCATTGCCTTTTCTCCCCCACCCGCCCACGTTCATATTT
GTGTTCTGTTTGGGGGCAGTTTTTCTTAATTATTTAAAAGATAGGAAGCAAGGGGTGCCT
AAATCTAGAATCAGGGTCTGCTGCTGGGCCACGGGGGTTCAATCCAGCCAGCAGTGGGGG
GGAGGTCCCCAGCAGGCCGTGAGCAACTTGGGAGTCTGACCGGCAGCCCTCTGGCCCGCC
TTTCCCCCAGCTTTCAGGCAGGCTCTGAAATGCGCCCCGCCCCGTTCTCTGCTGGTCAGC
GGCTGCTGCCCCCTCCCCAGCCCAGCCATCCAGCCACACATTTCTACCTGGCCAGCACAG
ACCGGGGCTCCGGGGTTGGGAGTGGAACCCTCCCCGCCTCAGGGTTCTCCTTACTCCTTT
TTCCTGCCCCACCAAGAGTTCTGCCAGGGGCGGGTTTGACAAAAACAAAAGACCCTACCA
CCTCTACATATTATGGAAAGAAAATATTTTTGTCAATTCTTATTCTTTTATAATTATGCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               251-470, - strand, RNAz p=0.999558

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-470, - strand, RNAz p=0.999558

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               287-406, DB371313 OVARC1 Homo sapiens cDNA clone OVARC1000553 3', mRNA 
(dbj|DB371313.1|), blast E-value=0.000000000001, identity=84.3% 
               

               
               287-406, BX435978 Homo sapiens T CELLS (JURKAT CELL LINE) Homo sapiens cDNA 
(emb|BX435978.2|), blast E-value=0.000000000001, identity=84.3% 
               

               
               287-456, 145365 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE236632.1|), 
blast E-value=3e-25, identity=84.12% 
               

               
               287-406, 602338221F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE (gb|BG163287.1|), 
blast E-value=0.00000000000002, identity=84.17% 
               

               
               287-456, 962809 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK774088.1|), 
blast E-value=3e-25, identity=84.12% 
               

               
               287-406, zb85b11.s1 Soares_senescent_fibroblasts_NbHSF Homo sapiens cDNA 
(gb|N99944.1|), blast E-value=0.0000000000002, identity=84.3%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               287-406, DB371313 OVARC1 Homo sapiens cDNA clone OVARC1000553 3', mRNA 
(dbj|DB371313.1|), blast E-value=0.000000000001, identity=84.3% 
               

               
               287-406, BX435978 Homo sapiens T CELLS (JURKAT CELL LINE) Homo sapiens cDNA 
(emb|BX435978.2|), blast E-value=0.000000000001, identity=84.3% 
               

               
               287-456, 145365 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BE236632.1|), 
blast E-value=3e-25, identity=84.12% 
               

               
               287-406, 602338221F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE (gb|BG163287.1|), 
blast E-value=0.00000000000002, identity=84.17% 
               

               
               287-456, 962809 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK774088.1|), 
blast E-value=3e-25, identity=84.12% 
               

               
               287-406, zb85b11.s1 Soares_senescent_fibroblasts_NbHSF Homo sapiens cDNA 
(gb|N99944.1|), blast E-value=0.0000000000002, identity=84.3%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-470, gnl|bosTau2|chr7 (15283022-15282546)
               

               
               2-470, gnl|Hg17|chr19 (4627197-4626374)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-470, gnl|bosTau2|chr7 (15283022-15282546)
               

               
               2-470, gnl|Hg17|chr19 (4627197-4626374)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               jej (0.0989218)

	287-406, DB371313 OVARC1 Homo sapiens cDNA clone OVARC1000553 3', mRNA (dbj\|DB371313.1\|), blast E-value=0.000000000001, identity=84.3%
	287-406, BX435978 Homo sapiens T CELLS (JURKAT CELL LINE) Homo sapiens cDNA (emb\|BX435978.2\|), blast E-value=0.000000000001, identity=84.3%
	287-456, 145365 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE236632.1\|), blast E-value=3e-25, identity=84.12%
	287-406, 602338221F1 NIH_MGC_89 Homo sapiens cDNA clone IMAGE (gb\|BG163287.1\|), blast E-value=0.00000000000002, identity=84.17%
	287-456, 962809 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK774088.1\|), blast E-value=3e-25, identity=84.12%
	287-406, zb85b11.s1 Soares_senescent_fibroblasts_NbHSF Homo sapiens cDNA (gb\|N99944.1\|), blast E-value=0.0000000000002, identity=84.3%

	2-470, gnl\|bosTau2\|chr7 (15283022-15282546)
	2-470, gnl\|Hg17\|chr19 (4627197-4626374)