Non-Coding RNA Search

Ss1.1-rjej09b_f8.5

Sequence:


               
               GAAACGGGATCCCTGAGCTGCCTCAGCTGGTGCGGCGCATGCGGCAGCAGAGGAAACACA
TGCTGCAGGAGAAGCTGCACCTCAAGTTCTGCCATGAGGCGGTGGTGAGACATGTGGAAC
AGGTCCTGCAGCGCCATGGCGTGCTCCCTCCATGCAGACCCTCAGCCAGCATCAGTGTCA
GCCAGAAGAATCACCTTCCTCCGGATTCCCAGGACCTGGTCCTCGGTGGGGACGTGCCCA
TCAGTTCCATCCAGGCCACTATTGCAAAACTCAGTATTCGGCCTTCTGGGGGCTTGGATT
CCCCGGCTGCCAGCCTGCCTGGGCCTGTAGAGGCCCCAGGCCTGCCACCAACCAGCCTCC
CAGAGTCCACCCAACTTCCATCCTCGTCCCCACCGCCCCTCTCTTCACCCCTGCCTGAGG
CTCCCCAGCCTGAGGAGGAACCACCAGTACCAGAAGTCCCCACCCTGGGGCCCCCCTCCT
CCTCCCTGGAGCTGCTGGCCTCCCTCACTCCTGAAGCCTTCTCCCTGGACAGCTCCTTGC
GGGGAAAGCAGCGAATGAGCAAGCAGAACTTCCTGCAGGCCCATAATGGGCAGGGTCTGC
GGGCTGCCCGGCCCACTGATGACCCTCTTAGCCTTCTGGATCCACTCTGGACACTCAACA
AGACCTAACAGGCTTTGTCTACCTGGTCCTTACACTACTTCATCTCCCATGCCTGTCTCC
CCTCTTGGAGCGAGGCCTAGTCTTACTCCCATTCCTGCTGCCTTCAGCCCTACCTGGCCC
GGCCTGTACCTTTGGGGTAAAGATGCATCACAGGTCTTGGGTCAGGTTCTGCTCCTTTGT
GGGACCTGACGTTTTTCAGCTCTTTGCTATTGAATAAACAGACCTGTTCTGTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAACGGGATCCCTGAGCTGCCTCAGCTGGTGCGGCGCATGCGGCAGCAGAGGAAACACA
TGCTGCAGGAGAAGCTGCACCTCAAGTTCTGCCATGAGGCGGTGGTGAGACATGTGGAAC
AGGTCCTGCAGCGCCATGGCGTGCTCCCTCCATGCAGACCCTCAGCCAGCATCAGTGTCA
GCCAGAAGAATCACCTTCCTCCGGATTCCCAGGACCTGGTCCTCGGTGGGGACGTGCCCA
TCAGTTCCATCCAGGCCACTATTGCAAAACTCAGTATTCGGCCTTCTGGGGGCTTGGATT
CCCCGGCTGCCAGCCTGCCTGGGCCTGTAGAGGCCCCAGGCCTGCCACCAACCAGCCTCC
CAGAGTCCACCCAACTTCCATCCTCGTCCCCACCGCCCCTCTCTTCACCCCTGCCTGAGG
CTCCCCAGCCTGAGGAGGAACCACCAGTACCAGAAGTCCCCACCCTGGGGCCCCCCTCCT
CCTCCCTGGAGCTGCTGGCCTCCCTCACTCCTGAAGCCTTCTCCCTGGACAGCTCCTTGC
GGGGAAAGCAGCGAATGAGCAAGCAGAACTTCCTGCAGGCCCATAATGGGCAGGGTCTGC
GGGCTGCCCGGCCCACTGATGACCCTCTTAGCCTTCTGGATCCACTCTGGACACTCAACA
AGACCTAACAGGCTTTGTCTACCTGGTCCTTACACTACTTCATCTCCCATGCCTGTCTCC
CCTCTTGGAGCGAGGCCTAGTCTTACTCCCATTCCTGCTGCCTTCAGCCCTACCTGGCCC
GGCCTGTACCTTTGGGGTAAAGATGCATCACAGGTCTTGGGTCAGGTTCTGCTCCTTTGT
GGGACCTGACGTTTTTCAGCTCTTTGCTATTGAATAAACAGACCTGTTCTGTGAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6467511|gb|AAF13172.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6467511|gb|AAF13172.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               386-585, - strand, RNAz p=0.997292
               

               
               626-719, - strand, RNAz p=0.902995
               

               
               737-903, + strand, RNAz p=0.997588

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-585, - strand, RNAz p=0.997292
               

               
               626-719, - strand, RNAz p=0.902995
               

               
               737-903, + strand, RNAz p=0.997588

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC089042, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC089042, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               187-719, gnl|bosTau2|chr22 (40305678-40306208)
               

               
               187-719, gnl|Hg17|chr3 (47429198-47429772)
               

               
               187-719, gnl|Mm7|chr9 (110083780-110083263)
               


               
               737-903, gnl|bosTau2|chr22 (19032089-19032256)
               

               
               737-903, gnl|Hg17|chr3 (47429752-47429916)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-719, gnl|bosTau2|chr22 (40305678-40306208)
               

               
               187-719, gnl|Hg17|chr3 (47429198-47429772)
               

               
               187-719, gnl|Mm7|chr9 (110083780-110083263)
               


               
               737-903, gnl|bosTau2|chr22 (19032089-19032256)
               

               
               737-903, gnl|Hg17|chr3 (47429752-47429916)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	386-585, - strand, RNAz p=0.997292
	626-719, - strand, RNAz p=0.902995
	737-903, + strand, RNAz p=0.997588

	187-719, gnl\|bosTau2\|chr22 (40305678-40306208)
	187-719, gnl\|Hg17\|chr3 (47429198-47429772)
	187-719, gnl\|Mm7\|chr9 (110083780-110083263)

	737-903, gnl\|bosTau2\|chr22 (19032089-19032256)
	737-903, gnl\|Hg17\|chr3 (47429752-47429916)

	ecc (0.345105)
	fce (0.271592)
	fcc (0.197785)
	fty (0.17584)
	pty (0.142714)
	lnt (0.142308)
	pla (0.133672)
	nbm (0.0993246)
	jej (0.0989218)