Non-Coding RNA Search

Ss1.1-rjej09b_j18.5

Sequence:


               
               TTTTTTTTTTTTTTTTTAAGATTTCAGTTTTTTAATAAATTACAAATAAATGTTCACATA
ATATCAATATCATATTTGGAGGGAGAGAAGGGGTACAAAGCCGAAGGTCTGCAGGGAACG
GGATTCCAGGTAGTATGCCGGATGCTGGTTCTCTAGCTGAGGAGGTGAAGGTGCTGCCAC
CCAGTGTGGCACCTGGCAGTTTCAGAGGGGGTTTGGGATCTGCCCTTCCTCACGCCGTGT
CAGCTGTCTTCAGTCTCCAGGACAGAGAAGGCCTCACCCAAAGGCCTTTTGGTGGCCACC
AGAACTAGGTTTCTGGGAGAGAGTTCGGGGCTGAAGATGGGCAGGAGCTCAGCATGGAAG
CCCTGCTCCTGAAGGTAGAGTAGCCGGTCCAGCAGAATCAGTGTCTCCACCAGTGGGGCC
AGCAGCAGAGCCAGGCTGAAGAAGGCCACCACACGGTTCTCCTGGGCCTGGTGGGCCCGA
AGGGCAGCCAGATTCAGCGGCAGGTGGGGGTCCAGCCCCACCCGCTGTAGCCCCCGCTGC
ACATATTCTTCAATCTTGAGCTCGTGGACCCTGGGGATCCCCTGCACGCCTGGCCGGCGG
AGCTCAGGCTGGGCTCGCCGGATGACGGTCTCCAGCGCCGCCCGGTAGCAGTGGGTGCGG
AGGCCTGGGCCTGCTCTCTGTAGCCGCTCAGCATACTCCTCCAGGGCGTGACAGGCCCCC
TCCCGCAGCCTGTAGGGCAGTTCATAGCCGGGCAGCCCAGCCACCCACTGACTCAGTGGG
TAGCCGCCAGGGTCACTCAGCTTCATGTAGCAGCAGCCCACGGAGGCCAGGGCCACCACC
TCAGGGCAGCAGGAGAAATGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTAAGATTTCAGTTTTTTAATAAATTACAAATAAATGTTCACATA
ATATCAATATCATATTTGGAGGGAGAGAAGGGGTACAAAGCCGAAGGTCTGCAGGGAACG
GGATTCCAGGTAGTATGCCGGATGCTGGTTCTCTAGCTGAGGAGGTGAAGGTGCTGCCAC
CCAGTGTGGCACCTGGCAGTTTCAGAGGGGGTTTGGGATCTGCCCTTCCTCACGCCGTGT
CAGCTGTCTTCAGTCTCCAGGACAGAGAAGGCCTCACCCAAAGGCCTTTTGGTGGCCACC
AGAACTAGGTTTCTGGGAGAGAGTTCGGGGCTGAAGATGGGCAGGAGCTCAGCATGGAAG
CCCTGCTCCTGAAGGTAGAGTAGCCGGTCCAGCAGAATCAGTGTCTCCACCAGTGGGGCC
AGCAGCAGAGCCAGGCTGAAGAAGGCCACCACACGGTTCTCCTGGGCCTGGTGGGCCCGA
AGGGCAGCCAGATTCAGCGGCAGGTGGGGGTCCAGCCCCACCCGCTGTAGCCCCCGCTGC
ACATATTCTTCAATCTTGAGCTCGTGGACCCTGGGGATCCCCTGCACGCCTGGCCGGCGG
AGCTCAGGCTGGGCTCGCCGGATGACGGTCTCCAGCGCCGCCCGGTAGCAGTGGGTGCGG
AGGCCTGGGCCTGCTCTCTGTAGCCGCTCAGCATACTCCTCCAGGGCGTGACAGGCCCCC
TCCCGCAGCCTGTAGGGCAGTTCATAGCCGGGCAGCCCAGCCACCCACTGACTCAGTGGG
TAGCCGCCAGGGTCACTCAGCTTCATGTAGCAGCAGCCCACGGAGGCCAGGGCCACCACC
TCAGGGCAGCAGGAGAAATGCCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               137-362, + strand, RNAz p=0.597523

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               137-362, + strand, RNAz p=0.597523

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               18-362, gnl|bosTau2|chr3 (11076885-11076546)
               

               
               18-362, gnl|Hg17|chr1 (153519814-153519496)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-362, gnl|bosTau2|chr3 (11076885-11076546)
               

               
               18-362, gnl|Hg17|chr1 (153519814-153519496)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               cov (0.132153)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               ill (0.175593)
               

               
               cag (0.151194)
               

               
               cov (0.132153)

	18-362, gnl\|bosTau2\|chr3 (11076885-11076546)
	18-362, gnl\|Hg17\|chr1 (153519814-153519496)