Non-Coding RNA Search

Ss1.1-rjej09b_k12.5

Sequence:


               
               TGAGAATATCATACCATTTAGAGAGTAGATACCTTTGCCTTTTTTAAAAAAGCCATTATT
TTATAAGACTTAGTACTGACACTGCAAATAATTACTTCTCACAGTTCTGCCTTTACACGT
TTCTTGGGAGCTTACTTTGTATGTTCCCTGTAGATGCCTCAAAACTTTTTTTTTTTTAAC
TTATCAAATATTTTTCTAAGTTTTTCCAGAAACTTTTGAAAGTGTCCATCCTTTCAGGTC
TGCAGAACCATAGCTTCCATGAACATGAGAGAATGCAGACTCTCACTGTTGACTGTGTTG
AGCTATGTCCCCTGTCTAATGAAAGCTGTACTGTTGATATCTGTGAAAATGCACTGTAAT
TTTCTGGAATGATTGGAGAATACTGGAAGCCCCTGTACTGATTTTCCTTGTGGTCCATGT
GGATCTTGTCTTCTGTGTAACTCCTCAAGTGGGATAGATCTTTTAGTCTAGGATGCTGCT
GCCTTATTACTGATTATCTTAAAATGTCCTCTGCTGGGGCAGTGTGGGCCAAATTAAAAC
AAGCAAACAACACCCCCCCCACCCCCACCCCCACCGCCGCCACAATCCTCTGCAAAAACC
AACACAATTATTCCATGAGGTCTCTTACTTGGTTGACACTGTGCTCTTCAAATTTATCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGAATATCATACCATTTAGAGAGTAGATACCTTTGCCTTTTTTAAAAAAGCCATTATT
TTATAAGACTTAGTACTGACACTGCAAATAATTACTTCTCACAGTTCTGCCTTTACACGT
TTCTTGGGAGCTTACTTTGTATGTTCCCTGTAGATGCCTCAAAACTTTTTTTTTTTTAAC
TTATCAAATATTTTTCTAAGTTTTTCCAGAAACTTTTGAAAGTGTCCATCCTTTCAGGTC
TGCAGAACCATAGCTTCCATGAACATGAGAGAATGCAGACTCTCACTGTTGACTGTGTTG
AGCTATGTCCCCTGTCTAATGAAAGCTGTACTGTTGATATCTGTGAAAATGCACTGTAAT
TTTCTGGAATGATTGGAGAATACTGGAAGCCCCTGTACTGATTTTCCTTGTGGTCCATGT
GGATCTTGTCTTCTGTGTAACTCCTCAAGTGGGATAGATCTTTTAGTCTAGGATGCTGCT
GCCTTATTACTGATTATCTTAAAATGTCCTCTGCTGGGGCAGTGTGGGCCAAATTAAAAC
AAGCAAACAACACCCCCCCCACCCCCACCCCCACCGCCGCCACAATCCTCTGCAAAAACC
AACACAATTATTCCATGAGGTCTCTTACTTGGTTGACACTGTGCTCTTCAAATTTATCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-115, - strand, RNAz p=0.994525

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-115, - strand, RNAz p=0.994525

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-552, gnl|bosTau2|chr10 (45747356-45747907)
               

               
               2-552, gnl|Hg17|chr14 (54379762-54379234)
               

               
               2-552, gnl|Mm7|chr14 (42476188-42475707)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-552, gnl|bosTau2|chr10 (45747356-45747907)
               

               
               2-552, gnl|Hg17|chr14 (54379762-54379234)
               

               
               2-552, gnl|Mm7|chr14 (42476188-42475707)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	2-552, gnl\|bosTau2\|chr10 (45747356-45747907)
	2-552, gnl\|Hg17\|chr14 (54379762-54379234)
	2-552, gnl\|Mm7\|chr14 (42476188-42475707)