Ss1.1-rjej09b_p6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCACCCCCTGGCCGGTTGCCCTCCCCAGGCCCACGGCAGCCACTGCCCTTGGTCCCCC GGCCCCTGTACAGGCCAAGGCCAGGAGAGTGACAGAGGACAGACAGGAGAGGGAGGAACT GACCCACAGGGAGCAGCCAGCAGCTGGTGGCCCCAGGGGCCTGGGTGGGCTGCCCACGGC AGGCCCAGTTGGGCCAGATCTCCCTGTCCAGGAAGAGGGGGCAGAGGCCAGGGCATGGCC TGAAGAGAACCTCATCCCGGATGCCCAGGCCACTCCCGGCAGCACTGGGCAGGAGGGAGC CGGGCCTGTTCCAGCATCCAGACGGCAGAGAAGCAGACCTGGCTCCATTCCTATTTTCAC AAATGGTCAGCTGCCACGTCGGGCCGCAGCAATGCCATGCCACATATTAAGACGTATATG AGACCCTCTCCAGACTTCAGTCAAATTGCTTGGTTCCTTGTCACAAGTGCCAATCTGTCC AAGGCCGCCTGGGGAGCGTTAGAGAAAAACGGCAGCCAGCTGATGATCCGCTCCTACGAG CTCGGCGTCCTTTTCCTCCCAGCGGCCTTTGGCCTGGACAGCTTCAGAGTGAAGCAGAAA TTCTTCTCAGGGAGCCAGGAGCCAACAGCCTCCTTTCCTGTGCCGTATGATTTGCCTCCA GAACTGTATGGAAGTAAAGATCGGCCATGGATTTGGAACATTCCTTATATGAAAGCACCC GATACACACGGGAACATGTGGGTCCCCTCCTGAGAGCCGTAAAGCACAGTGAAATTGAAG TGTGAAGCTGAAGCGTGAGCCATCGAGCCCCCGGCGTTGGATGTTCTGTTCGTACTGGAT GTTCACGTCCCTTGATGAACAATGTCCCTTATCTGCCGCCGCCCCCGTCCCTCCCATAAA ACCCTTTGCAGAGGTCAATTTCAAACATGGATGTTGGTTATCCTTTGAATGGTCCCTCTT AACATTCTCACTTTAAAAAAATTACATATATTTTCCTAATTCCCTTTTTTATGCTTTGGA ATGCAAGCTATTAAACTTGACGATGTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCACCCCCTGGCCGGTTGCCCTCCCCAGGCCCACGGCAGCCACTGCCCTTGGTCCCCC GGCCCCTGTACAGGCCAAGGCCAGGAGAGTGACAGAGGACAGACAGGAGAGGGAGGAACT GACCCACAGGGAGCAGCCAGCAGCTGGTGGCCCCAGGGGCCTGGGTGGGCTGCCCACGGC AGGCCCAGTTGGGCCAGATCTCCCTGTCCAGGAAGAGGGGGCAGAGGCCAGGGCATGGCC TGAAGAGAACCTCATCCCGGATGCCCAGGCCACTCCCGGCAGCACTGGGCAGGAGGGAGC CGGGCCTGTTCCAGCATCCAGACGGCAGAGAAGCAGACCTGGCTCCATTCCTATTTTCAC AAATGGTCAGCTGCCACGTCGGGCCGCAGCAATGCCATGCCACATATTAAGACGTATATG AGACCCTCTCCAGACTTCAGTCAAATTGCTTGGTTCCTTGTCACAAGTGCCAATCTGTCC AAGGCCGCCTGGGGAGCGTTAGAGAAAAACGGCAGCCAGCTGATGATCCGCTCCTACGAG CTCGGCGTCCTTTTCCTCCCAGCGGCCTTTGGCCTGGACAGCTTCAGAGTGAAGCAGAAA TTCTTCTCAGGGAGCCAGGAGCCAACAGCCTCCTTTCCTGTGCCGTATGATTTGCCTCCA GAACTGTATGGAAGTAAAGATCGGCCATGGATTTGGAACATTCCTTATATGAAAGCACCC GATACACACGGGAACATGTGGGTCCCCTCCTGAGAGCCGTAAAGCACAGTGAAATTGAAG TGTGAAGCTGAAGCGTGAGCCATCGAGCCCCCGGCGTTGGATGTTCTGTTCGTACTGGAT GTTCACGTCCCTTGATGAACAATGTCCCTTATCTGCCGCCGCCCCCGTCCCTCCCATAAA ACCCTTTGCAGAGGTCAATTTCAAACATGGATGTTGGTTATCCTTTGAATGGTCCCTCTT AACATTCTCACTTTAAAAAAATTACATATATTTTCCTAATTCCCTTTTTTATGCTTTGGA ATGCAAGCTATTAAACTTGACGATGTTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-290, - strand, RNAz p=0.999962 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-290, - strand, RNAz p=0.999962 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-290, gnl|bosTau2|chr22 (46039484-46039195) | |
| 1-290, gnl|Hg17|chr3 (13587584-13587913) | |
| 1-290, gnl|Mm7|chr6 (91316112-91316416) | |
| 360-467, gnl|bosTau2|chr10 (69676385-69676278) | |
| 360-467, gnl|canFam2|chr8 (64093695-64093820) | |
| 360-467, gnl|danRer3|chr17 (12541454-12541583) | |
| 360-467, gnl|dasNov1|scaffold_1732 (42336-42464) | |
| 360-467, gnl|echTel1|scaffold_87169 (822-950) | |
| 360-467, gnl|fr1|chrUn (163961935-163961807) | |
| 360-467, gnl|galGal2|chr5 (40503741-40503866) | |
| 360-467, gnl|hg17|chr14 (89529459-89529587) | |
| 360-467, gnl|Hg17|chr14 (89529473-89529580) | |
| 360-467, gnl|mm7|chr12 (97410467-97410595) | |
| 360-467, gnl|Mm7|chr12 (97410481-97410588) | |
| 360-467, gnl|monDom2|scaffold_8 (37009217-37009089) | |
| 360-467, gnl|oryCun1|scaffold_204887 (29618-29748) | |
| 360-467, gnl|panTro1|chr15 (89793445-89793573) | |
| 360-467, gnl|rheMac2|chr7 (153215175-153215303) | |
| 360-467, gnl|rn3|chr6 (124130937-124131065) | |
| 360-467, gnl|tetNig1|chrUn_random (136434705-136434827) | |
| 360-467, gnl|xenTro1|scaffold_22 (2092965-2093089) | |
| 678-857, gnl|bosTau2|chr10 (69638704-69638538) | |
| 678-857, gnl|Hg17|chr14 (89579165-89579331) | |
| 890-1052, gnl|bosTau2|chr10 (69638528-69638365) | |
| 890-1052, gnl|Hg17|chr14 (89579341-89579491) | |
| 890-1052, gnl|Mm7|chr12 (97450424-97450570) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-290, gnl|bosTau2|chr22 (46039484-46039195) | |
| 1-290, gnl|Hg17|chr3 (13587584-13587913) | |
| 1-290, gnl|Mm7|chr6 (91316112-91316416) | |
| 360-467, gnl|bosTau2|chr10 (69676385-69676278) | |
| 360-467, gnl|canFam2|chr8 (64093695-64093820) | |
| 360-467, gnl|danRer3|chr17 (12541454-12541583) | |
| 360-467, gnl|dasNov1|scaffold_1732 (42336-42464) | |
| 360-467, gnl|echTel1|scaffold_87169 (822-950) | |
| 360-467, gnl|fr1|chrUn (163961935-163961807) | |
| 360-467, gnl|galGal2|chr5 (40503741-40503866) | |
| 360-467, gnl|hg17|chr14 (89529459-89529587) | |
| 360-467, gnl|Hg17|chr14 (89529473-89529580) | |
| 360-467, gnl|mm7|chr12 (97410467-97410595) | |
| 360-467, gnl|Mm7|chr12 (97410481-97410588) | |
| 360-467, gnl|monDom2|scaffold_8 (37009217-37009089) | |
| 360-467, gnl|oryCun1|scaffold_204887 (29618-29748) | |
| 360-467, gnl|panTro1|chr15 (89793445-89793573) | |
| 360-467, gnl|rheMac2|chr7 (153215175-153215303) | |
| 360-467, gnl|rn3|chr6 (124130937-124131065) | |
| 360-467, gnl|tetNig1|chrUn_random (136434705-136434827) | |
| 360-467, gnl|xenTro1|scaffold_22 (2092965-2093089) | |
| 678-857, gnl|bosTau2|chr10 (69638704-69638538) | |
| 678-857, gnl|Hg17|chr14 (89579165-89579331) | |
| 890-1052, gnl|bosTau2|chr10 (69638528-69638365) | |
| 890-1052, gnl|Hg17|chr14 (89579341-89579491) | |
| 890-1052, gnl|Mm7|chr12 (97450424-97450570) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) | |
| jej (0.0989218) |