Ss1.1-rjej09b_p8.5
|
AGTGGCTCCGCTGTAAATATCCTGCCTCAGAACCTCTGAGAACACATCGAAGCTTGGAGT
CAGCTCCGTGGTTGCAGAAAATCCGCTTCTCTGGGTTCCGTGCTGGTGAATTTCTGTGCC
ACCATGGCCATGGTAGCCACCCAAGCAGTCTTATCCTCTAGCCTGGCTTCCAAGATACTG
GCGACAGGGAGTCTGGCCAAAGCAGGGGGGGCAGCTGTTGGCAGCGTCTTGGCAGGACTT
CCTTCAGCAGGGCTCACCCTGTCATTCAAGGCTGCCCTAACCGGGGCCGCATCTAGCCTG
GGATCCTTGCTGGGGACACTGAGTACTTCCTCCCTGATAGGATCCCCTCCTGTGACTTTG
ATGGCTTCTTCACTAGGAGCCAAGGCTTCTGTAGCTGTGGCGGGAGGAGCCCTGGCCGTG
GGGGCTGTGCCCGCGGTGCTGGGCGCCGTGGGCTACACGGGGGCAGGAATCACCGCCTCC
TCCTTGGCGGCCAAGATGATGTCAGCGGCTGCCATTGCCAACGGGGGCGGGGTTGCAGCC
GGCAGCCTGGTAGCGACCCTCCAGTCTGTGGGGGCTGGTGGACTCTCCTTGTCATCCAAA
GCCCTTCTGGGCACCGTGGGGTCTGTCCTCCTGACCAAAATAGTGGGCTTGTAATAGCTC
CCTGTCACTCCTACTGCAGAGAAGAGGATTTGGTGGGTCCCTGCCCCCCAGCCCAACGCA
GTGAGGCACCAGTCCTGGGATGACAAGATGCCAGATGCTACACCCCCCTTGAAAACAAGC
AATAAAAATGAGTTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTGGCTCCGCTGTAAATATCCTGCCTCAGAACCTCTGAGAACACATCGAAGCTTGGAGT
CAGCTCCGTGGTTGCAGAAAATCCGCTTCTCTGGGTTCCGTGCTGGTGAATTTCTGTGCC
ACCATGGCCATGGTAGCCACCCAAGCAGTCTTATCCTCTAGCCTGGCTTCCAAGATACTG
GCGACAGGGAGTCTGGCCAAAGCAGGGGGGGCAGCTGTTGGCAGCGTCTTGGCAGGACTT
CCTTCAGCAGGGCTCACCCTGTCATTCAAGGCTGCCCTAACCGGGGCCGCATCTAGCCTG
GGATCCTTGCTGGGGACACTGAGTACTTCCTCCCTGATAGGATCCCCTCCTGTGACTTTG
ATGGCTTCTTCACTAGGAGCCAAGGCTTCTGTAGCTGTGGCGGGAGGAGCCCTGGCCGTG
GGGGCTGTGCCCGCGGTGCTGGGCGCCGTGGGCTACACGGGGGCAGGAATCACCGCCTCC
TCCTTGGCGGCCAAGATGATGTCAGCGGCTGCCATTGCCAACGGGGGCGGGGTTGCAGCC
GGCAGCCTGGTAGCGACCCTCCAGTCTGTGGGGGCTGGTGGACTCTCCTTGTCATCCAAA
GCCCTTCTGGGCACCGTGGGGTCTGTCCTCCTGACCAAAATAGTGGGCTTGTAATAGCTC
CCTGTCACTCCTACTGCAGAGAAGAGGATTTGGTGGGTCCCTGCCCCCCAGCCCAACGCA
GTGAGGCACCAGTCCTGGGATGACAAGATGCCAGATGCTACACCCCCCTTGAAAACAAGC
AATAAAAATGAGTTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
408-572, gnl|bosTau2|chr21 (39657421-39657585) |
|
408-572, gnl|canFam2|chr8 (66195633-66195444) |
|
408-572, gnl|danRer3|chr13 (36750891-36750718) |
|
408-572, gnl|dasNov1|scaffold_95517 (1416-1602) |
|
408-572, gnl|echTel1|scaffold_287444 (35365-35171) |
|
408-572, gnl|fr1|chrUn (317729948-317730124) |
|
408-572, gnl|hg17|chr14 (93664582-93664773) |
|
408-572, gnl|Hg17|chr14 (93664767-93664603) |
|
408-572, gnl|loxAfr1|scaffold_56073 (1185-985) |
|
408-572, gnl|mm7|chr12 (100938473-100938667) |
|
408-572, gnl|Mm7|chr12 (100938661-100938497) |
|
408-572, gnl|oryCun1|scaffold_137471 (8186-8363) |
|
408-572, gnl|panTro1|chr15_random (21596686-21596877) |
|
408-572, gnl|rheMac2|chr7 (157358597-157358788) |
|
408-572, gnl|rn3|chr6 (127737895-127738089) |
|
408-572, gnl|tetNig1|chr10 (3646736-3646560) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
408-572, gnl|bosTau2|chr21 (39657421-39657585) |
|
408-572, gnl|canFam2|chr8 (66195633-66195444) |
|
408-572, gnl|danRer3|chr13 (36750891-36750718) |
|
408-572, gnl|dasNov1|scaffold_95517 (1416-1602) |
|
408-572, gnl|echTel1|scaffold_287444 (35365-35171) |
|
408-572, gnl|fr1|chrUn (317729948-317730124) |
|
408-572, gnl|hg17|chr14 (93664582-93664773) |
|
408-572, gnl|Hg17|chr14 (93664767-93664603) |
|
408-572, gnl|loxAfr1|scaffold_56073 (1185-985) |
|
408-572, gnl|mm7|chr12 (100938473-100938667) |
|
408-572, gnl|Mm7|chr12 (100938661-100938497) |
|
408-572, gnl|oryCun1|scaffold_137471 (8186-8363) |
|
408-572, gnl|panTro1|chr15_random (21596686-21596877) |
|
408-572, gnl|rheMac2|chr7 (157358597-157358788) |
|
408-572, gnl|rn3|chr6 (127737895-127738089) |
|
408-572, gnl|tetNig1|chr10 (3646736-3646560) |
|
jej (2.07736) |
|
duo (1.90081) |
|
ute (1.46063) |
|
cag (1.36075) |
|
nmm (1.19522) |
|
nje (1.16144) |
|
ill (1.05356) |
|
cga (0.837287) |
|
csp (0.805932) |
|
col (0.780031) |
|
jca (0.683761) |
|
cov (0.396458) |
|
nep (0.36785) |
|
pgl (0.35545) |
|
fhi (0.339155) |
|
fce (0.271592) |
|
ece (0.229305) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
eep (0.122564) |
|
cly (0.120642) |
|
med (0.116252) |
|
eje (0.0988338) |
|
jej (2.07736) |
|
duo (1.90081) |
|
ute (1.46063) |
|
cag (1.36075) |
|
nmm (1.19522) |
|
nje (1.16144) |
|
ill (1.05356) |
|
cga (0.837287) |
|
csp (0.805932) |
|
col (0.780031) |
|
jca (0.683761) |
|
cov (0.396458) |
|
nep (0.36785) |
|
pgl (0.35545) |
|
fhi (0.339155) |
|
fce (0.271592) |
|
ece (0.229305) |
|
cty (0.20816) |
|
nlu (0.191681) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
eep (0.122564) |
|
cly (0.120642) |
|
med (0.116252) |
|
eje (0.0988338) |
