Non-Coding RNA Search

Ss1.1-rjej10b_e23.5

Sequence:


               
               CGCGCTCGTCCGCTCCCGCCCCGCCACCCGTCCCGGACCGGCGCCGCCATGCCCAAGTGC
CCCAAGTGCAACAAGGAGGTATACTTTGCTGAGCGGGTGACCTCCCTGGGGAAGGACTGG
CACCGGCCTTGCCTGAAGTGTGAGAAATGTGGAAAGACGCTGACCTCGGGGGGCCATGCC
GAGCATGAGGGCAAGCCCTACTGCAACCACCCCTGCTACGCGGCCATGTTCGGACCCAAA
GGCTTTGGACGCGGTGGAGCCGAGAGTCACACCTTCAAGTAAACCCAGGTTTTGGAGACC
TCATCCCTGGCTGCCCGCCAGGCCACTGCCCGTCTAGGCTGATGGCAGGCCTTCTCCACA
GGCACCTGTAGACCCCGTGCCCTCAATAAACGGAACACTCGGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCTCGTCCGCTCCCGCCCCGCCACCCGTCCCGGACCGGCGCCGCCATGCCCAAGTGC
CCCAAGTGCAACAAGGAGGTATACTTTGCTGAGCGGGTGACCTCCCTGGGGAAGGACTGG
CACCGGCCTTGCCTGAAGTGTGAGAAATGTGGAAAGACGCTGACCTCGGGGGGCCATGCC
GAGCATGAGGGCAAGCCCTACTGCAACCACCCCTGCTACGCGGCCATGTTCGGACCCAAA
GGCTTTGGACGCGGTGGAGCCGAGAGTCACACCTTCAAGTAAACCCAGGTTTTGGAGACC
TCATCCCTGGCTGCCCGCCAGGCCACTGCCCGTCTAGGCTGATGGCAGGCCTTCTCCACA
GGCACCTGTAGACCCCGTGCCCTCAATAAACGGAACACTCGGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30583201|gb|AAP35845.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30583201|gb|AAP35845.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-380, + strand, RNAz p=0.997282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-380, + strand, RNAz p=0.997282

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-391, gnl|bosTau2|chr23 (17624087-17624475)
               

               
               2-391, gnl|Hg17|chr22 (23432781-23433160)
               


               
               5-380, gnl|bosTau2|chr12 (8307667-8307292)
               

               
               5-380, gnl|Hg17|chr22 (23432765-23433137)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-391, gnl|bosTau2|chr23 (17624087-17624475)
               

               
               2-391, gnl|Hg17|chr22 (23432781-23433160)
               


               
               5-380, gnl|bosTau2|chr12 (8307667-8307292)
               

               
               5-380, gnl|Hg17|chr22 (23432765-23433137)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               jej (3.6601)
               

               
               ill (2.80948)
               

               
               jca (1.7094)
               

               
               nco (1.4556)
               

               
               csp (0.805932)
               

               
               cly (0.603209)
               

               
               col (0.585023)
               

               
               nca (0.547495)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (3.6601)
               

               
               ill (2.80948)
               

               
               jca (1.7094)
               

               
               nco (1.4556)
               

               
               csp (0.805932)
               

               
               cly (0.603209)
               

               
               col (0.585023)
               

               
               nca (0.547495)
               

               
               cag (0.302389)
               

               
               cga (0.279096)
               

               
               ute (0.265569)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               cov (0.132153)

	2-391, gnl\|bosTau2\|chr23 (17624087-17624475)
	2-391, gnl\|Hg17\|chr22 (23432781-23433160)

	5-380, gnl\|bosTau2\|chr12 (8307667-8307292)
	5-380, gnl\|Hg17\|chr22 (23432765-23433137)

	jej (3.6601)
	ill (2.80948)
	jca (1.7094)
	nco (1.4556)
	csp (0.805932)
	cly (0.603209)
	col (0.585023)
	nca (0.547495)
	cag (0.302389)
	cga (0.279096)
	ute (0.265569)
	mas (0.210305)
	nep (0.183925)
	ton (0.1755)
	rec (0.17307)
	eli (0.151814)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	cov (0.132153)