Non-Coding RNA Search

Ss1.1-rjej10b_e8.5

Sequence:


               
               CAGGTCATAATAGAATCACAGCATAGGGGATGTATTTTGCAATATGAGTGGAATAATGTG
ATCTCAATGCCAAGTTATTAAAAGGTGCTGCTTTTATGTCAAAAAAAGAAAAAGAAAAAA
AGGAGTTCCCTGGTGGCCTGGAGAGTAAGGATGTTCAATCCCTGGCCTAGGAACTTTGGC
CTGCCACAAGTGTGGCCTACGGAAATTAAAAGGTGCTGCTTTTGAAGTGGTGGGTTAATA
AAACATCTTTTTTAGGTTGAAAGGCTTAATTAACTGAGGAATCCACTGCTATACTGTGTG
CTCCATCAGAGACACAGTGAGCTGCTGGTCAAAACAGTATGAGATTATATACCATAAAAT
CATTACTTCAGTGTTAACGACTGCCTTAGAAACTTGCATATCACAGTCACAGTAGATCAG
TAAGCTCTGACGAGCTTCAAGAGCCACAGTCCCCTAACTAACCCTAACCCTACACCGCAG
CTGATGGCAATGCCAGATCTTTAACCCAGTGATAGAGGCCATGGATCAAACCTGGGTCCT
CATGGACACTAGTCAGATTTGCTTCTGCCGAGCCACAGCGGGAACTCCTCTCCAGCATGG
TATTTAAAAGTTTCTCCTTTACTATGATTGTTCAGCTCAGCTCATGTTTGTAAAAGGCAC
TACAGTTATTTCTAACAGTCCCTAACTAAAAAGATTTCAATTAATAATGTGTGGCCTATG
GCAAACACTATGGAGGTTCCTTTAAAAACTAAAAACAGAGCTACCACATGACCCAGCAGT
CCCAATCCTGGGTATATATCCAGAAAAGACAAAAACTATGATTTTTAAAAAGATAACATG
CAGCACTATTTA------------------------------------------------
------------------------------------------------AAAAAAAGAATG
AAATGTCATTCGCAGCAATGTGGACGAACCTAGACATATACTTAGAAGTCAGCCAAAGAC
ACATACTCTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGTCATAATAGAATCACAGCATAGGGGATGTATTTTGCAATATGAGTGGAATAATGTG
ATCTCAATGCCAAGTTATTAAAAGGTGCTGCTTTTATGTCAAAAAAAGAAAAAGAAAAAA
AGGAGTTCCCTGGTGGCCTGGAGAGTAAGGATGTTCAATCCCTGGCCTAGGAACTTTGGC
CTGCCACAAGTGTGGCCTACGGAAATTAAAAGGTGCTGCTTTTGAAGTGGTGGGTTAATA
AAACATCTTTTTTAGGTTGAAAGGCTTAATTAACTGAGGAATCCACTGCTATACTGTGTG
CTCCATCAGAGACACAGTGAGCTGCTGGTCAAAACAGTATGAGATTATATACCATAAAAT
CATTACTTCAGTGTTAACGACTGCCTTAGAAACTTGCATATCACAGTCACAGTAGATCAG
TAAGCTCTGACGAGCTTCAAGAGCCACAGTCCCCTAACTAACCCTAACCCTACACCGCAG
CTGATGGCAATGCCAGATCTTTAACCCAGTGATAGAGGCCATGGATCAAACCTGGGTCCT
CATGGACACTAGTCAGATTTGCTTCTGCCGAGCCACAGCGGGAACTCCTCTCCAGCATGG
TATTTAAAAGTTTCTCCTTTACTATGATTGTTCAGCTCAGCTCATGTTTGTAAAAGGCAC
TACAGTTATTTCTAACAGTCCCTAACTAAAAAGATTTCAATTAATAATGTGTGGCCTATG
GCAAACACTATGGAGGTTCCTTTAAAAACTAAAAACAGAGCTACCACATGACCCAGCAGT
CCCAATCCTGGGTATATATCCAGAAAAGACAAAAACTATGATTTTTAAAAAGATAACATG
CAGCACTATTTA------------------------------------------------
------------------------------------------------AAAAAAAGAATG
AAATGTCATTCGCAGCAATGTGGACGAACCTAGACATATACTTAGAAGTCAGCCAAAGAC
ACATACTCTATT

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               716-863, gnl|bosTau2|chrX (39939205-39939061)
               

               
               716-863, gnl|hg17|chrX (15637836-15638615)
               

               
               716-863, gnl|Hg17|chrX (15638167-15638023)
               

               
               716-863, gnl|panTro1|chrX (16106275-16107052)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               716-863, gnl|bosTau2|chrX (39939205-39939061)
               

               
               716-863, gnl|hg17|chrX (15637836-15638615)
               

               
               716-863, gnl|Hg17|chrX (15638167-15638023)
               

               
               716-863, gnl|panTro1|chrX (16106275-16107052)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.197844)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)

	716-863, gnl\|bosTau2\|chrX (39939205-39939061)
	716-863, gnl\|hg17\|chrX (15637836-15638615)
	716-863, gnl\|Hg17\|chrX (15638167-15638023)
	716-863, gnl\|panTro1\|chrX (16106275-16107052)