Ss1.1-rjej10b_i2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTTCCCAGGCCTGCGCTGGTGGATCTCCCAGGTGCCGAAATTTCGTGTGTCACCCTCA GGTCTTACTCCAGACACCCAACTCCTCTTTCCCTCACGTCACCACGGCCATTCCGCTCCG AACTGCATTTCCCAGGAGGCTTGGCCGCTTAAACTAGCTTTCCAGAGCCTTACTGGACGT GACAACTACTTTTCCCAGACAGCTTTGCGGCTGCCGGCCCCGAAGACTAAGGTTCGAGGA CTCATTTTGCAGCGGAACAGAGACCCCTCTCTGGCGTCTCGCAGCCGAGACTTCATGTCC CGGAGGCCTTTGCGCCTGACAGGCGACCACGCTTCCCAGAGGCCTCTGCGGCGCCGCGAC CGGAAGCGGCGGGCGAGCCGAGTGTCCTTGCGCACGGAGCTGAGTGATCATGGTACCTCG AGTGTGGTCGCTGATGAGGTTCCTCATCAAGGGCAGTGTGGCTGGGGGCGCTATCTACCT GGTATATGACCAGGACCTGCTGGGGCCCAGCGACAAGAGCCAGGCTGCCCTTCAGAAAGC CGAGGAGGTGGTCCCCCCTGCTGTGTACCAGTTCAGCCAGTACGTGTGCGAGCAGACTGG CCTGAAGATACCCCAGCTCCCAGCCCCTCCAAAGTTTAACTTTCACATACGGGACTACTG GAATTCAGGCGTCATCAAGGTGATGTCGGCTCTGTCTGTGGCCCCCTCAAAGGCTCGAGA GTACTCCAAGGAGGGCTGGGAATACCTGAAGGAGCGAACCAAGTAGCCTGTCAGAGGAGG CTGCCTGCCCCAGGTGGGAACAAGGCACCATGGACACCAGACTTGGACCCCATGCTTGAG GGCAGCTCCCAGCCTTGCCGGCTCAATAAAGGACTTGGAAATGTTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTTCCCAGGCCTGCGCTGGTGGATCTCCCAGGTGCCGAAATTTCGTGTGTCACCCTCA GGTCTTACTCCAGACACCCAACTCCTCTTTCCCTCACGTCACCACGGCCATTCCGCTCCG AACTGCATTTCCCAGGAGGCTTGGCCGCTTAAACTAGCTTTCCAGAGCCTTACTGGACGT GACAACTACTTTTCCCAGACAGCTTTGCGGCTGCCGGCCCCGAAGACTAAGGTTCGAGGA CTCATTTTGCAGCGGAACAGAGACCCCTCTCTGGCGTCTCGCAGCCGAGACTTCATGTCC CGGAGGCCTTTGCGCCTGACAGGCGACCACGCTTCCCAGAGGCCTCTGCGGCGCCGCGAC CGGAAGCGGCGGGCGAGCCGAGTGTCCTTGCGCACGGAGCTGAGTGATCATGGTACCTCG AGTGTGGTCGCTGATGAGGTTCCTCATCAAGGGCAGTGTGGCTGGGGGCGCTATCTACCT GGTATATGACCAGGACCTGCTGGGGCCCAGCGACAAGAGCCAGGCTGCCCTTCAGAAAGC CGAGGAGGTGGTCCCCCCTGCTGTGTACCAGTTCAGCCAGTACGTGTGCGAGCAGACTGG CCTGAAGATACCCCAGCTCCCAGCCCCTCCAAAGTTTAACTTTCACATACGGGACTACTG GAATTCAGGCGTCATCAAGGTGATGTCGGCTCTGTCTGTGGCCCCCTCAAAGGCTCGAGA GTACTCCAAGGAGGGCTGGGAATACCTGAAGGAGCGAACCAAGTAGCCTGTCAGAGGAGG CTGCCTGCCCCAGGTGGGAACAAGGCACCATGGACACCAGACTTGGACCCCATGCTTGAG GGCAGCTCCCAGCCTTGCCGGCTCAATAAAGGACTTGGAAATGTTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 47-442, gnl|bosTau2|chr7 (13346274-13346661) | |
| 47-442, gnl|Hg17|chr19 (5631861-5631465) | |
| 666-885, gnl|bosTau2|chr7 (13347958-13348178) | |
| 666-885, gnl|canFam2|chr20 (57288059-57288287) | |
| 666-885, gnl|canFam2|chr20 (57288288-57288037) | |
| 666-885, gnl|echTel1|scaffold_200508 (1665-1544) | |
| 666-885, gnl|echTel1|scaffold_217913 (909-632) | |
| 666-885, gnl|galGal2|chrUn (113275403-113275614) | |
| 666-885, gnl|hg17|chr17 (809284-809482) | |
| 666-885, gnl|hg17|chr19 (5629433-5629682) | |
| 666-885, gnl|Hg17|chr19 (5629662-5629431) | |
| 666-885, gnl|loxAfr1|scaffold_102458 (4052-4282) | |
| 666-885, gnl|loxAfr1|scaffold_102458 (4283-4046) | |
| 666-885, gnl|mm7|chr17 (54817498-54817286) | |
| 666-885, gnl|mm7|chr17 (54817283-54817519) | |
| 666-885, gnl|Mm7|chr17 (54817503-54817281) | |
| 666-885, gnl|panTro1|chr19 (938354-938552) | |
| 666-885, gnl|panTro1|chr20 (5955434-5955683) | |
| 666-885, gnl|rheMac2|chr16 (745589-745892) | |
| 666-885, gnl|rheMac2|chr19 (5580179-5580428) | |
| 666-885, gnl|rn3|chr4 (80077711-80077511) | |
| 666-885, gnl|rn3|chrUn (25171335-25171097) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-442, gnl|bosTau2|chr7 (13346274-13346661) | |
| 47-442, gnl|Hg17|chr19 (5631861-5631465) | |
| 666-885, gnl|bosTau2|chr7 (13347958-13348178) | |
| 666-885, gnl|canFam2|chr20 (57288059-57288287) | |
| 666-885, gnl|canFam2|chr20 (57288288-57288037) | |
| 666-885, gnl|echTel1|scaffold_200508 (1665-1544) | |
| 666-885, gnl|echTel1|scaffold_217913 (909-632) | |
| 666-885, gnl|galGal2|chrUn (113275403-113275614) | |
| 666-885, gnl|hg17|chr17 (809284-809482) | |
| 666-885, gnl|hg17|chr19 (5629433-5629682) | |
| 666-885, gnl|Hg17|chr19 (5629662-5629431) | |
| 666-885, gnl|loxAfr1|scaffold_102458 (4052-4282) | |
| 666-885, gnl|loxAfr1|scaffold_102458 (4283-4046) | |
| 666-885, gnl|mm7|chr17 (54817498-54817286) | |
| 666-885, gnl|mm7|chr17 (54817283-54817519) | |
| 666-885, gnl|Mm7|chr17 (54817503-54817281) | |
| 666-885, gnl|panTro1|chr19 (938354-938552) | |
| 666-885, gnl|panTro1|chr20 (5955434-5955683) | |
| 666-885, gnl|rheMac2|chr16 (745589-745892) | |
| 666-885, gnl|rheMac2|chr19 (5580179-5580428) | |
| 666-885, gnl|rn3|chr4 (80077711-80077511) | |
| 666-885, gnl|rn3|chrUn (25171335-25171097) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| mas (0.42061) | |
| ute (0.398353) | |
| cov (0.396458) | |
| fty (0.351679) | |
| sme (0.305437) | |
| jej (0.296765) | |
| eje (0.296501) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) | |
| ute (0.398353) | |
| cov (0.396458) | |
| fty (0.351679) | |
| sme (0.305437) | |
| jej (0.296765) | |
| eje (0.296501) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| nmm (0.265604) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| nbm (0.0993246) |