Non-Coding RNA Search

Ss1.1-rjej11b_k15.5

Sequence:


               
               GGCCCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCCTGACCGGGACCCGGGCG
GGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCC
CGCTTCCTCACCGTCGGCTACGTGGACGACACGCAGTTCGTGAGGTTCGACAGCGACGCC
CCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGATACAGCAGGAGGGGCAGGACTATTGG
GATCGGGAGACACAGATCAGCAAGGAAACCGCACAGACTTACCGAGTGAACCTGAACACC
CTGCGCAGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCCTCCAGAGAATGTACGGC
TGCGACGTGGGGCCAGACGGGCTCTTCCTCCGCGGGTACAGTCAGTTTGGCTACGACGGC
GCCGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCT
CAGATCTCCAAGCGCAAGTTTGATGCAGCCAATGTGGCGGAGCAGGAGAGGAGCTACCTG
CAGGGCCTGTGTGTGGAGGGGCTCCGCAGATACCTGGAGATGGGGAAGGACACGCTGCAG
CGCGCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACC
TTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAG
GGCCAGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACC
TTCCAGAAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCCTGACCGGGACCCGGGCG
GGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCC
CGCTTCCTCACCGTCGGCTACGTGGACGACACGCAGTTCGTGAGGTTCGACAGCGACGCC
CCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGATACAGCAGGAGGGGCAGGACTATTGG
GATCGGGAGACACAGATCAGCAAGGAAACCGCACAGACTTACCGAGTGAACCTGAACACC
CTGCGCAGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCCTCCAGAGAATGTACGGC
TGCGACGTGGGGCCAGACGGGCTCTTCCTCCGCGGGTACAGTCAGTTTGGCTACGACGGC
GCCGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCT
CAGATCTCCAAGCGCAAGTTTGATGCAGCCAATGTGGCGGAGCAGGAGAGGAGCTACCTG
CAGGGCCTGTGTGTGGAGGGGCTCCGCAGATACCTGGAGATGGGGAAGGACACGCTGCAG
CGCGCAGAGCCTCCAAAGACACATGTGACCCGCCACCCCAGCTCTGACCTGGGGGTCACC
TTGAGGTGCTGGGCCCTGGGCTTCTACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAG
GGCCAGGACCAGAGCCAGGACATGGAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACC
TTCCAGAAGTGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|29027459|gb|AAO62099.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29027459|gb|AAO62099.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               65-332, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               65-332, gnl|Hg17|chr6 (31432710-31432443)
               

               
               65-332, gnl|Mm7|chr17 (33358731-33358998)
               


               
               365-615, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               365-615, gnl|Hg17|chr6 (31347071-31346829)
               

               
               365-615, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-332, gnl|bosTau2|chr23 (20551142-20551409)
               

               
               65-332, gnl|Hg17|chr6 (31432710-31432443)
               

               
               65-332, gnl|Mm7|chr17 (33358731-33358998)
               


               
               365-615, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               365-615, gnl|Hg17|chr6 (31347071-31346829)
               

               
               365-615, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ill (1.75593)
               

               
               jej (0.791374)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (1.75593)
               

               
               jej (0.791374)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               eru (0.120048)

	65-332, gnl\|bosTau2\|chr23 (20551142-20551409)
	65-332, gnl\|Hg17\|chr6 (31432710-31432443)
	65-332, gnl\|Mm7\|chr17 (33358731-33358998)

	365-615, gnl\|bosTau2\|chr20 (36655627-36655873)
	365-615, gnl\|Hg17\|chr6 (31347071-31346829)
	365-615, gnl\|Mm7\|chr17 (32077846-32077606)

	ill (1.75593)
	jej (0.791374)
	nep (0.183925)
	fty (0.17584)
	eru (0.120048)