Non-Coding RNA Search

Ss1.1-rjej11b_o1.5

Sequence:


               
               ATCTGACCATCCATATCAAATGTTCCCATTCAAACATTACCCAGCATCATGGTTTCCAAC
TTAAAAAAAACTGATCCTTATATCTAGTGGCACTTGGAATCTTTTATGCCGTGATATTGC
AGCAGTATCAAGAGGATTTTATGGAAAATTGGGATGTCTCTGTGACCAAGGCTAATTAGA
TAAAGGATAAACCTCGTGCGTTTGGGAAAGGCTATTTCTTAACAATCTTTCTCCCCCCAC
GCCCTGCCCAAGGACTTTCTAGCAGTACCCAAATGCTTTGTTTTAAATAGATTCACACTA
ACCAGCGTCCTTTTTTAGATTCTTTAGGGTTAGTGTGAATCTCTAAACCAGCTTCCAGTT
GTGTTTCATCACTTTCATGTGCATTTTATTTGGCATTTGTCTGAAGAAAGGAAAGAGGAA
AGCAAATATGAATTGTACTATTTGTACTAAATCTTTGGATTTCTTGGTACATTTATTTCA
GAGTAAAGTATTAGGAGAAGAAAGACTTGTTTCTGAGGCGGAAAGTCTAATTATAATACA
TTTGACTTATGATGACGGTTTGTTCACTCTCTCAAATGAATTTGCTTTGAAAACAAATGA
AAAAAAAAAAAAAAAGAAAGAAAGAAAACAGATGAAGAGCAGCTCTCCTCCTTCCCTCCA
CTAAGTGTTCAGGTGTGGCATGCTCAGAGGATCCTGCTGGATTCCAGCGGGAACTCTGTG
CTACCCTGCTGTTCCTGCGGTTGATTTGTTCTTTTCTTTCCAAAGTGGATGCAAACAACA
TGATCCCAAAAGACAAGCCTAGTTAATTCCAGCTGATGATTGGAGACCAGAAAATTTGTA
AATGGATGGTTTGATATTACTGCAAATAAAAAAAGGGCCTGGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGACCATCCATATCAAATGTTCCCATTCAAACATTACCCAGCATCATGGTTTCCAAC
TTAAAAAAAACTGATCCTTATATCTAGTGGCACTTGGAATCTTTTATGCCGTGATATTGC
AGCAGTATCAAGAGGATTTTATGGAAAATTGGGATGTCTCTGTGACCAAGGCTAATTAGA
TAAAGGATAAACCTCGTGCGTTTGGGAAAGGCTATTTCTTAACAATCTTTCTCCCCCCAC
GCCCTGCCCAAGGACTTTCTAGCAGTACCCAAATGCTTTGTTTTAAATAGATTCACACTA
ACCAGCGTCCTTTTTTAGATTCTTTAGGGTTAGTGTGAATCTCTAAACCAGCTTCCAGTT
GTGTTTCATCACTTTCATGTGCATTTTATTTGGCATTTGTCTGAAGAAAGGAAAGAGGAA
AGCAAATATGAATTGTACTATTTGTACTAAATCTTTGGATTTCTTGGTACATTTATTTCA
GAGTAAAGTATTAGGAGAAGAAAGACTTGTTTCTGAGGCGGAAAGTCTAATTATAATACA
TTTGACTTATGATGACGGTTTGTTCACTCTCTCAAATGAATTTGCTTTGAAAACAAATGA
AAAAAAAAAAAAAAAGAAAGAAAGAAAACAGATGAAGAGCAGCTCTCCTCCTTCCCTCCA
CTAAGTGTTCAGGTGTGGCATGCTCAGAGGATCCTGCTGGATTCCAGCGGGAACTCTGTG
CTACCCTGCTGTTCCTGCGGTTGATTTGTTCTTTTCTTTCCAAAGTGGATGCAAACAACA
TGATCCCAAAAGACAAGCCTAGTTAATTCCAGCTGATGATTGGAGACCAGAAAATTTGTA
AATGGATGGTTTGATATTACTGCAAATAAAAAAAGGGCCTGGGAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-601, gnl|bosTau2|chr19 (5066646-5067251)
               

               
               1-601, gnl|Hg17|chr17 (55273495-55274123)
               

               
               1-601, gnl|Mm7|chr11 (86653970-86653222)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-601, gnl|bosTau2|chr19 (5066646-5067251)
               

               
               1-601, gnl|Hg17|chr17 (55273495-55274123)
               

               
               1-601, gnl|Mm7|chr11 (86653970-86653222)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               jej (0.296765)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               jej (0.296765)
               

               
               nmm (0.265604)
               

               
               bla (0.248694)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-601, gnl\|bosTau2\|chr19 (5066646-5067251)
	1-601, gnl\|Hg17\|chr17 (55273495-55274123)
	1-601, gnl\|Mm7\|chr11 (86653970-86653222)

	elu (0.385356)
	cmu (0.372787)
	fty (0.351679)
	duo (0.345602)
	jej (0.296765)
	nmm (0.265604)
	bla (0.248694)
	nlu (0.191681)
	sto (0.179824)
	ill (0.175593)
	sin (0.174948)
	nje (0.16592)
	lun (0.150489)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	nca (0.136874)
	kid (0.129735)
	thg (0.126791)
	spc (0.113366)
	cty (0.10408)