Non-Coding RNA Search

Ss1.1-rjej11b_o19.5

Sequence:


               
               AGTAGCCATGGCGGCAATGAGTTTGTTGCAGCGGGCTTCAGTCACTGCTGTGGCCACTCT
GTCCCGCAGCCGCCTTGGCACACGGTTTGGATTCGGGGGTTTCCTCACCCATGGCTTTCC
TAAGACTGGCGCTCCCGTGCGACACAGTGGAGACCATGGGAAAAGGCTGTTTATCATCAA
GCCTTCTGGATTCTATGACAGGCGGTTTTTGAAATTAATGAGATTCTATATTTTGTTGAC
TGGAATTCCAGTAGCAATTGGCATAACTCTGGTGAATGTATTCATTGGTGAAGCTGAGTT
GGCAGATATTCCAGAAGGCTATGTCCCAGAACACTGGGAATATTTCAAGCATCCTATATC
AAGATGGATTGCTCGAACTTTCTATGATGGTCCTGAAAAGAATTATGAAAAAACGATGGC
CATCCTTCAAATTGAAGCTGAAAAGGCTGAATTACGGTTAAAGGAGCTAGAAGTTCGAAG
ATTAATGCGTGCAAGAGGCGATGGTCCGTGGTATCAGTATCCAACCATTGATAAGGCACT
TATTGATCATTCTCCAAAAACAACTCCTGACAACTAATCTTTTATTTCTCTAAATATAAA
ATATATTCTCTTTCAGGAAAAATAAATTACTAAATGTATTCTGTATTTTTTTCTGTGATG
AATAAAAGATCCTCTTCATTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGCCATGGCGGCAATGAGTTTGTTGCAGCGGGCTTCAGTCACTGCTGTGGCCACTCT
GTCCCGCAGCCGCCTTGGCACACGGTTTGGATTCGGGGGTTTCCTCACCCATGGCTTTCC
TAAGACTGGCGCTCCCGTGCGACACAGTGGAGACCATGGGAAAAGGCTGTTTATCATCAA
GCCTTCTGGATTCTATGACAGGCGGTTTTTGAAATTAATGAGATTCTATATTTTGTTGAC
TGGAATTCCAGTAGCAATTGGCATAACTCTGGTGAATGTATTCATTGGTGAAGCTGAGTT
GGCAGATATTCCAGAAGGCTATGTCCCAGAACACTGGGAATATTTCAAGCATCCTATATC
AAGATGGATTGCTCGAACTTTCTATGATGGTCCTGAAAAGAATTATGAAAAAACGATGGC
CATCCTTCAAATTGAAGCTGAAAAGGCTGAATTACGGTTAAAGGAGCTAGAAGTTCGAAG
ATTAATGCGTGCAAGAGGCGATGGTCCGTGGTATCAGTATCCAACCATTGATAAGGCACT
TATTGATCATTCTCCAAAAACAACTCCTGACAACTAATCTTTTATTTCTCTAAATATAAA
ATATATTCTCTTTCAGGAAAAATAAATTACTAAATGTATTCTGTATTTTTTTCTGTGATG
AATAAAAGATCCTCTTCATTGCTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               NISM_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               NISM_BOVIN

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               459-681, gnl|bosTau2|chr11 (63223608-63223819)
               

               
               459-681, gnl|Hg17|chr3 (180824412-180824637)
               

               
               459-681, gnl|Mm7|chr3 (32559798-32560012)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               459-681, gnl|bosTau2|chr11 (63223608-63223819)
               

               
               459-681, gnl|Hg17|chr3 (180824412-180824637)
               

               
               459-681, gnl|Mm7|chr3 (32559798-32560012)

Expressed library(ies): 56 entry(ies)

More info

Expressed library(ies): 56 entry(ies)

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               ssp (2.0328)
               

               
               ste (1.89292)
               

               
               vin (1.66279)
               

               
               hlv (1.53182)
               

               
               cbe (1.43541)
               

               
               ldo (1.26103)
               

               
               hea (1.22699)
               

               
               sme (1.22175)
               

               
               nms (0.855432)
               

               
               cki (0.826173)
               

               
               isp (0.75188)
               

               
               che (0.68157)
               

               
               mas (0.630915)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               jej (0.494609)
               

               
               pgl (0.473934)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (2.0328)
               

               
               ste (1.89292)
               

               
               vin (1.66279)
               

               
               hlv (1.53182)
               

               
               cbe (1.43541)
               

               
               ldo (1.26103)
               

               
               hea (1.22699)
               

               
               sme (1.22175)
               

               
               nms (0.855432)
               

               
               cki (0.826173)
               

               
               isp (0.75188)
               

               
               che (0.68157)
               

               
               mas (0.630915)
               

               
               nep (0.551775)
               

               
               ton (0.526501)
               

               
               jej (0.494609)
               

               
               pgl (0.473934)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               pty (0.285429)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)

	459-681, gnl\|bosTau2\|chr11 (63223608-63223819)
	459-681, gnl\|Hg17\|chr3 (180824412-180824637)
	459-681, gnl\|Mm7\|chr3 (32559798-32560012)

	ssp (2.0328)
	ste (1.89292)
	vin (1.66279)
	hlv (1.53182)
	cbe (1.43541)
	ldo (1.26103)
	hea (1.22699)
	sme (1.22175)
	nms (0.855432)
	cki (0.826173)
	isp (0.75188)
	che (0.68157)
	mas (0.630915)
	nep (0.551775)
	ton (0.526501)
	jej (0.494609)
	pgl (0.473934)
	elu (0.385356)
	ese (0.379507)
	ebs (0.354904)
	ill (0.351185)
	sin (0.349895)
	spc (0.340097)
	cut (0.339847)
	bfe (0.299715)
	eje (0.296501)
	pty (0.285429)
	cst (0.280073)
	fce (0.271592)
	pla (0.267344)
	thg (0.253582)
	bla (0.248694)
	fli (0.202881)
	fcc (0.197785)
	fty (0.17584)
	fbs (0.175346)
	rec (0.17307)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	fco (0.157208)
	tbr (0.154178)
	cag (0.151194)
	fat (0.147427)
	lin (0.145603)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	ecc (0.115035)
	nbm (0.0993246)