Non-Coding RNA Search

Ss1.1-rjej12b_b9.5

Sequence:


               
               ACCCCGAGGGGGTTCCTGAGGTGCCCTTGACCCCCGAGGCCGTGTCTGTGGAGCTGCAGC
CACTCATGCTGTGGATGGCCAACACCACGGAGCTGCTGAGCTTTGTACAGGAGAAGGTGC
TGGAGATGGAAAAGGAGGCCGACCAGGAGGACCCACAGCTCTGCAATGACTTGGAATTAT
GTGATGAGGCCATGGCCCTTCTGGATGAGGTCATCATGTGTACCTTCCAGCAGTCTGTCT
ACTACCTCACCAAGACTCTGTATTCAACGCTGCCTGCTCTCCTGGATAGTAACCCTTTCA
CAGCTGGGGCAGAGCTGCCGGGGCCTGGCGCTGAGCTGGGGGCCATGCCTCCTGGGTTGA
GACCTACCCTGGGCGTGTTCCAGGCAGCCCTGGAACTGACCAGCCAGTGCGAGCTGCACC
CGGATCTTGTGTCTCAGACATTTGGCTACTTGTTCTTCTTCTCCAATGCATCCCTTCTCA
ACTCGCTGATGGAACGAGGTCAAGGTCGACCTTTCTATCAATGGTCCCGAGCTGTGCAAA
TCCGAACCAACCTGGACCTTGTCTTGGACTGGCTGCAAGGGGCTGGCCTGGGCGACATTG
CCACTGAGTTCTTCCGGAAACTCTCCATGGCCGTGAACCTGCTCTGCGTGCCTCGCACCT
CCCTGCTCAAGGCTTCGTGGAGCAGCCTACGAACTGACCATCCCACACTGACCCCTGCTC
AGCTCCACCATTTGCTCAGCCATTACCAGCTGGGTCCTGGCCGCGGGCCTCCACCTGCCT
GGGATCCTCCCTCTGCAGAGCGGGATGCTGTGGACACAGGGGACATCTTCGAAAGCTTCT
CCTCCCACCCTCCCCTCATCCTGCCCTTGGGCAGCTCGCGCCTCTGCCTCACCGGTCCGG
TGACCGACGACGCCCTGCATCGTGAATTGCGCAGGCTCCGCCGCCTCCTCTGGGACCTTG
AGCAGCAGGAACTACCAGCCAATCATCGCCACGGACCTCCCGTGACCACGCCTCCTTGAA
CACCCATATCGAACGAACGCGCGAACCTTGAAAATTCCTTGGCTTCTAGCCACTAGAGCC
CACCCGAGCGCAAAGCTTTCTGGGAATTGTAGTTTTTTTCCCCCCGCGTGGAATACTGGG
AGTTTGAGTTCTGGAGTAGTAGAGGATGGGACAATGGGAAGATGGGTTTGGGATTTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCGAGGGGGTTCCTGAGGTGCCCTTGACCCCCGAGGCCGTGTCTGTGGAGCTGCAGC
CACTCATGCTGTGGATGGCCAACACCACGGAGCTGCTGAGCTTTGTACAGGAGAAGGTGC
TGGAGATGGAAAAGGAGGCCGACCAGGAGGACCCACAGCTCTGCAATGACTTGGAATTAT
GTGATGAGGCCATGGCCCTTCTGGATGAGGTCATCATGTGTACCTTCCAGCAGTCTGTCT
ACTACCTCACCAAGACTCTGTATTCAACGCTGCCTGCTCTCCTGGATAGTAACCCTTTCA
CAGCTGGGGCAGAGCTGCCGGGGCCTGGCGCTGAGCTGGGGGCCATGCCTCCTGGGTTGA
GACCTACCCTGGGCGTGTTCCAGGCAGCCCTGGAACTGACCAGCCAGTGCGAGCTGCACC
CGGATCTTGTGTCTCAGACATTTGGCTACTTGTTCTTCTTCTCCAATGCATCCCTTCTCA
ACTCGCTGATGGAACGAGGTCAAGGTCGACCTTTCTATCAATGGTCCCGAGCTGTGCAAA
TCCGAACCAACCTGGACCTTGTCTTGGACTGGCTGCAAGGGGCTGGCCTGGGCGACATTG
CCACTGAGTTCTTCCGGAAACTCTCCATGGCCGTGAACCTGCTCTGCGTGCCTCGCACCT
CCCTGCTCAAGGCTTCGTGGAGCAGCCTACGAACTGACCATCCCACACTGACCCCTGCTC
AGCTCCACCATTTGCTCAGCCATTACCAGCTGGGTCCTGGCCGCGGGCCTCCACCTGCCT
GGGATCCTCCCTCTGCAGAGCGGGATGCTGTGGACACAGGGGACATCTTCGAAAGCTTCT
CCTCCCACCCTCCCCTCATCCTGCCCTTGGGCAGCTCGCGCCTCTGCCTCACCGGTCCGG
TGACCGACGACGCCCTGCATCGTGAATTGCGCAGGCTCCGCCGCCTCCTCTGGGACCTTG
AGCAGCAGGAACTACCAGCCAATCATCGCCACGGACCTCCCGTGACCACGCCTCCTTGAA
CACCCATATCGAACGAACGCGCGAACCTTGAAAATTCCTTGGCTTCTAGCCACTAGAGCC
CACCCGAGCGCAAAGCTTTCTGGGAATTGTAGTTTTTTTCCCCCCGCGTGGAATACTGGG
AGTTTGAGTTCTGGAGTAGTAGAGGATGGGACAATGGGAAGATGGGTTTGGGATTTGAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NX72_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NX72_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.603021

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.603021

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC028614, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC028614, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-148, gnl|bosTau2|chr18 (49916203-49916056)
               

               
               1-148, gnl|Hg17|chr19 (53922225-53922078)
               

               
               1-148, gnl|Mm7|chr7 (41811063-41811210)
               


               
               253-505, gnl|bosTau2|chr18 (49914477-49914225)
               

               
               253-505, gnl|Hg17|chr19 (53920031-53919779)
               

               
               253-505, gnl|Mm7|chr7 (41812430-41812682)
               


               
               818-1200, gnl|bosTau2|chr18 (49912119-49911745)
               

               
               818-1200, gnl|Hg17|chr19 (53916068-53915689)
               

               
               818-1200, gnl|Mm7|chr7 (41814777-41815153)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-148, gnl|bosTau2|chr18 (49916203-49916056)
               

               
               1-148, gnl|Hg17|chr19 (53922225-53922078)
               

               
               1-148, gnl|Mm7|chr7 (41811063-41811210)
               


               
               253-505, gnl|bosTau2|chr18 (49914477-49914225)
               

               
               253-505, gnl|Hg17|chr19 (53920031-53919779)
               

               
               253-505, gnl|Mm7|chr7 (41812430-41812682)
               


               
               818-1200, gnl|bosTau2|chr18 (49912119-49911745)
               

               
               818-1200, gnl|Hg17|chr19 (53916068-53915689)
               

               
               818-1200, gnl|Mm7|chr7 (41814777-41815153)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nmm (0.132802)
               

               
               ecc (0.115035)

	1-148, gnl\|bosTau2\|chr18 (49916203-49916056)
	1-148, gnl\|Hg17\|chr19 (53922225-53922078)
	1-148, gnl\|Mm7\|chr7 (41811063-41811210)

	253-505, gnl\|bosTau2\|chr18 (49914477-49914225)
	253-505, gnl\|Hg17\|chr19 (53920031-53919779)
	253-505, gnl\|Mm7\|chr7 (41812430-41812682)

	818-1200, gnl\|bosTau2\|chr18 (49912119-49911745)
	818-1200, gnl\|Hg17\|chr19 (53916068-53915689)
	818-1200, gnl\|Mm7\|chr7 (41814777-41815153)

	jej (0.197844)
	fcc (0.197785)
	ton (0.1755)
	fbs (0.175346)
	nmm (0.132802)
	ecc (0.115035)