Non-Coding RNA Search

Ss1.1-rjej12b_i17.5

Sequence:


               
               CCGCTCCCCTCCCCAGACACCTCTCCTCCTCGCCTCCCACCCCCAACCCTTCACTGACCC
CAGCTCTTCCCTGGCTGCAGCCACACCTGCAGCTCCGGGGGCTTAACTCATCTTCCCGAG
GACTGAGAACTCTAGGAAGCCACACAAGTACATCCTTTCACAAAGAACATATGCTAGTTT
CTTGTAGATATTCACAGCTCATTTTAGAGCTCTGTACATAATGTCGTGGGTCTCTGTTTC
GTTCTGTTTCGTCCGTTTTTTGTATCTTGTTGGATGCACCTAGATATGGAAAATGGAAGT
CAAATTTTTCTTCGAAGACTGTATTTTCAAAATAAAACGTTTTCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCTCCCCTCCCCAGACACCTCTCCTCCTCGCCTCCCACCCCCAACCCTTCACTGACCC
CAGCTCTTCCCTGGCTGCAGCCACACCTGCAGCTCCGGGGGCTTAACTCATCTTCCCGAG
GACTGAGAACTCTAGGAAGCCACACAAGTACATCCTTTCACAAAGAACATATGCTAGTTT
CTTGTAGATATTCACAGCTCATTTTAGAGCTCTGTACATAATGTCGTGGGTCTCTGTTTC
GTTCTGTTTCGTCCGTTTTTTGTATCTTGTTGGATGCACCTAGATATGGAAAATGGAAGT
CAAATTTTTCTTCGAAGACTGTATTTTCAAAATAAAACGTTTTCTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-146, - strand, RNAz p=0.829624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-146, - strand, RNAz p=0.829624

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               40-131, - strand, RNAmicro p=0.940915

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               40-131, - strand, RNAmicro p=0.940915

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               3-348, gnl|bosTau2|chr14 (40835036-40834679)
               

               
               3-348, gnl|canFam2|chr13 (4031029-4031406)
               

               
               3-348, gnl|dasNov1|scaffold_9244 (44335-44701)
               

               
               3-348, gnl|echTel1|scaffold_260014 (10815-10444)
               

               
               3-348, gnl|galGal2|chr2 (126918192-126918488)
               

               
               3-348, gnl|hg17|chr8 (100033107-100033483)
               

               
               3-348, gnl|Hg17|chr8 (100033137-100033493)
               

               
               3-348, gnl|loxAfr1|scaffold_7441 (78237-77860)
               

               
               3-348, gnl|mm7|chr15 (35412247-35412618)
               

               
               3-348, gnl|Mm7|chr15 (35412277-35412623)
               

               
               3-348, gnl|monDom2|scaffold_3 (65276351-65275896)
               

               
               3-348, gnl|oryCun1|scaffold_205100 (120381-120722)
               

               
               3-348, gnl|panTro1|chr7 (102362082-102362458)
               

               
               3-348, gnl|rheMac2|chr8 (101483118-101483487)
               

               
               3-348, gnl|rn3|chr7 (70796590-70796965)
               

               
               3-348, gnl|xenTro1|scaffold_59 (173531-173880)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-348, gnl|bosTau2|chr14 (40835036-40834679)
               

               
               3-348, gnl|canFam2|chr13 (4031029-4031406)
               

               
               3-348, gnl|dasNov1|scaffold_9244 (44335-44701)
               

               
               3-348, gnl|echTel1|scaffold_260014 (10815-10444)
               

               
               3-348, gnl|galGal2|chr2 (126918192-126918488)
               

               
               3-348, gnl|hg17|chr8 (100033107-100033483)
               

               
               3-348, gnl|Hg17|chr8 (100033137-100033493)
               

               
               3-348, gnl|loxAfr1|scaffold_7441 (78237-77860)
               

               
               3-348, gnl|mm7|chr15 (35412247-35412618)
               

               
               3-348, gnl|Mm7|chr15 (35412277-35412623)
               

               
               3-348, gnl|monDom2|scaffold_3 (65276351-65275896)
               

               
               3-348, gnl|oryCun1|scaffold_205100 (120381-120722)
               

               
               3-348, gnl|panTro1|chr7 (102362082-102362458)
               

               
               3-348, gnl|rheMac2|chr8 (101483118-101483487)
               

               
               3-348, gnl|rn3|chr7 (70796590-70796965)
               

               
               3-348, gnl|xenTro1|scaffold_59 (173531-173880)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)
               

               
               jej (0.0989218)

	3-348, gnl\|bosTau2\|chr14 (40835036-40834679)
	3-348, gnl\|canFam2\|chr13 (4031029-4031406)
	3-348, gnl\|dasNov1\|scaffold_9244 (44335-44701)
	3-348, gnl\|echTel1\|scaffold_260014 (10815-10444)
	3-348, gnl\|galGal2\|chr2 (126918192-126918488)
	3-348, gnl\|hg17\|chr8 (100033107-100033483)
	3-348, gnl\|Hg17\|chr8 (100033137-100033493)
	3-348, gnl\|loxAfr1\|scaffold_7441 (78237-77860)
	3-348, gnl\|mm7\|chr15 (35412247-35412618)
	3-348, gnl\|Mm7\|chr15 (35412277-35412623)
	3-348, gnl\|monDom2\|scaffold_3 (65276351-65275896)
	3-348, gnl\|oryCun1\|scaffold_205100 (120381-120722)
	3-348, gnl\|panTro1\|chr7 (102362082-102362458)
	3-348, gnl\|rheMac2\|chr8 (101483118-101483487)
	3-348, gnl\|rn3\|chr7 (70796590-70796965)
	3-348, gnl\|xenTro1\|scaffold_59 (173531-173880)